Detailed information of evm.model.Ap13.1976 in Astrangia poculata

Genomic Location: Ap13:21157156...21159581
NR annotation: XP_020614460.1, zinc finger C2HC domain-containing protein 1C-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BJH1Zinc finger C2HC domain-containing protein 1A OS=Mus musculus OX=10090 GN=Zc2hc1a PE=1 SV=1
Q5REC0Zinc finger C2HC domain-containing protein 1A OS=Pongo abelii OX=9601 GN=ZC2HC1A PE=2 SV=1
Q96GY0Zinc finger C2HC domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ZC2HC1A PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010465 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13913
all species →		zf-C2HC_2zinc-finger of a C2HC-typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049899
all species →		DomainZinc finger, C2HC/C3H-typeInterproscan
IPR026104
all species →		FamilyZinc finger C2HC domain-containing protein 1CInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14649
all species →		ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1CInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap13.1976. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.1976.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.1976 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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