Gene detail

Detailed information of evm.model.Ap13.2020 in Astrangia poculata

Genomic Location: Ap13:21734031...21751606
NR annotation: XP_020623463.1, protease 2-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2020

atgtcgacttcattcacgcggtcaggttgtagaacatatgcagacgctgtattagccgacacagaaggttttcaagagaaacttacaaaagaaattcatgacgtgattgacaaacactttgacgatgagtcagtaccagaggagctagatggttatgtttattatttgagtaatccaccaaagaacttccatcttcctgtgtatcgcagaagaaaaatattagaagaggcccttagtgcactggactctggttcaagtgttctgggttctagccctggctggggtccctgcattgtgttcttgggcaagacacttaactctcacagtgcctctctccacccagatggctcctatggtgatccagagacaatacttgatcaaaatgagttactggaacgatatgcacacgtggccataccaaagattaaaatgtccccatcaggaaggtatattggtttcttgctggacaaaagtggcgagggaactcacagcttatatattacagaggcacatgaaggaatgataaattttgttgatgccatacctaaagtcatgaattttgaatggggaagtgatgacctctcactgtactatacaaggcctgatgataacaatcgaccgtttgctgttttactgcatcaaacttgtcagagtgtactatcggatgttgtcttacatgaagagaaagatgaaagattcattgttgatgtgagtgttacaaaagacaggaagtttattaccatcaactgtaactcaaaatcaacctctgaggttagcatcgtcgacatcagagatgggtcttttatttcccagccactgcaccccagacagcagggaatggaatactacgtggaccacagggataatcagttttacatcataacaaatgctgacgataaaaactacagaataatgactacatcagagagcaatccggggaaagaaaactgggaaacatttgttggagacaaaaaagagattttcctagatgacatggatgtatttcaaaactgttgtgtggtgtatgagagacaccggactattcctcaacttcgcattgtacctttcgacaaacctgaggaccaatatgtggtgcagtttatttatagtgacaaatcatttccattgcagcttcctaaagacatttgtgttttagaagcaggatcaaatctgatgtttgatcaccccagtgtgcgtttaacagtgtcttcaccaattctgcctgctcgtgtcttagagtacaacatggaaaccaagtcaatggttgaaaaacatagcttctctgttttgccatcttttgacagctcagaattttgctgcaccagacatgaaatacaaagtaaggatggcactcatgttcctgtgacattattccatcataaagatctcaaaaaggatggaaacaatcctatgctgctgcatgtttatggatcgtatggtatcaatgtaaatatgggttttgatgtggaaaggatcagcctcttaaaacgaggttggtgtcttgccttctgtcatgtcagaggtggtggtgagcttggtcgccagtggtacttagaaggaagactgcagagtaaacataagagctttgaggattttgaagcttgtacacaagctctccatcaaatgggatactccaaccctcaattaacagcggcacgtggaacaagtgcagggggattaattgtgggtgctgtctgcaacagatcaccaggactcttcaaggctgttattcttcgggttccatttttagatattttgacaccaatgttggatccctctctcccgctgactatccaggaatacgaggagtggggcgaacctgggtccagtgaaagtgactttcattacatcaaatcatactgtccatatcagaacattaaatatcagccttacccttcagtgatggtctcctctgcaatgaatgatgaccgtgtgccgtactggctgcctctgaagtgggtggctcgcctaagggatcagttatcaagccaggaggagggggacaagccactgattgtgtgtcatgttgattattatggagggcactctgaaacagaaggaatgtaccgaaggattgaaaagactgcaaaggagtatgctttcctacacaaggcattggggctaccactagaaatgaatgataaaaataatgtattcaagttcgtggagatgtgctacagcattctggaggcatttgtgaccaaagtaaaggcttcagaagaaaaaaagggggcgtggccccactcctcctacctccaaggagaagaattcaagttcattctggagtag

Transcript

evm.model.Ap13.2020

ATGTCGACTTCATTCACGCGGTCAGGTTGTAGAACATATGCAGACGCTGTATTAGCCGACACAGAAGGTTTTCAAGAGAAACTTACAAAAGAAATTCATGACGTGATTGACAAACACTTTGACGATGAGTCAGTACCAGAGGAGCTAGATGGTTATGTTTATTATTTGAGTAATCCACCAAAGAACTTCCATCTTCCTGTGTATCGCAGAAGAAAAATATTAGAAGAGGCCCTTAGTGCACTGGACTCTGGTTCAAGTGTTCTGGGTTCTAGCCCTGGCTGGGGTCCCTGCATTGTGTTCTTGGGCAAGACACTTAACTCTCACAGTGCCTCTCTCCACCCAGATGGCTCCTATGGTGATCCAGAGACAATACTTGATCAAAATGAGTTACTGGAACGATATGCACACGTGGCCATACCAAAGATTAAAATGTCCCCATCAGGAAGGTATATTGGTTTCTTGCTGGACAAAAGTGGCGAGGGAACTCACAGCTTATATATTACAGAGGCACATGAAGGAATGATAAATTTTGTTGATGCCATACCTAAAGTCATGAATTTTGAATGGGGAAGTGATGACCTCTCACTGTACTATACAAGGCCTGATGATAACAATCGACCGTTTGCTGTTTTACTGCATCAAACTTGTCAGAGTGTACTATCGGATGTTGTCTTACATGAAGAGAAAGATGAAAGATTCATTGTTGATGTGAGTGTTACAAAAGACAGGAAGTTTATTACCATCAACTGTAACTCAAAATCAACCTCTGAGGTTAGCATCGTCGACATCAGAGATGGGTCTTTTATTTCCCAGCCACTGCACCCCAGACAGCAGGGAATGGAATACTACGTGGACCACAGGGATAATCAGTTTTACATCATAACAAATGCTGACGATAAAAACTACAGAATAATGACTACATCAGAGAGCAATCCGGGGAAAGAAAACTGGGAAACATTTGTTGGAGACAAAAAAGAGATTTTCCTAGATGACATGGATGTATTTCAAAACTGTTGTGTGGTGTATGAGAGACACCGGACTATTCCTCAACTTCGCATTGTACCTTTCGACAAACCTGAGGACCAATATGTGGTGCAGTTTATTTATAGTGACAAATCATTTCCATTGCAGCTTCCTAAAGACATTTGTGTTTTAGAAGCAGGATCAAATCTGATGTTTGATCACCCCAGTGTGCGTTTAACAGTGTCTTCACCAATTCTGCCTGCTCGTGTCTTAGAGTACAACATGGAAACCAAGTCAATGGTTGAAAAACATAGCTTCTCTGTTTTGCCATCTTTTGACAGCTCAGAATTTTGCTGCACCAGACATGAAATACAAAGTAAGGATGGCACTCATGTTCCTGTGACATTATTCCATCATAAAGATCTCAAAAAGGATGGAAACAATCCTATGCTGCTGCATGTTTATGGATCGTATGGTATCAATGTAAATATGGGTTTTGATGTGGAAAGGATCAGCCTCTTAAAACGAGGTTGGTGTCTTGCCTTCTGTCATGTCAGAGGTGGTGGTGAGCTTGGTCGCCAGTGGTACTTAGAAGGAAGACTGCAGAGTAAACATAAGAGCTTTGAGGATTTTGAAGCTTGTACACAAGCTCTCCATCAAATGGGATACTCCAACCCTCAATTAACAGCGGCACGTGGAACAAGTGCAGGGGGATTAATTGTGGGTGCTGTCTGCAACAGATCACCAGGACTCTTCAAGGCTGTTATTCTTCGGGTTCCATTTTTAGATATTTTGACACCAATGTTGGATCCCTCTCTCCCGCTGACTATCCAGGAATACGAGGAGTGGGGCGAACCTGGGTCCAGTGAAAGTGACTTTCATTACATCAAATCATACTGTCCATATCAGAACATTAAATATCAGCCTTACCCTTCAGTGATGGTCTCCTCTGCAATGAATGATGACCGTGTGCCGTACTGGCTGCCTCTGAAGTGGGTGGCTCGCCTAAGGGATCAGTTATCAAGCCAGGAGGAGGGGGACAAGCCACTGATTGTGTGTCATGTTGATTATTATGGAGGGCACTCTGAAACAGAAGGAATGTACCGAAGGATTGAAAAGACTGCAAAGGAGTATGCTTTCCTACACAAGGCATTGGGGCTACCACTAGAAATGAATGATAAAAATAATGTATTCAAGTTCGTGGAGATGTGCTACAGCATTCTGGAGGCATTTGTGACCAAAGTAAAGGCTTCAGAAGAAAAAAAGGGGGCGTGGCCCCACTCCTCCTACCTCCAAGGAGAAGAATTCAAGTTCATTCTGGAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKL5	Prolyl endopeptidase-like OS=Gallus gallus OX=9031 GN=PREPL PE=2 SV=1
Q32N48	Prolyl endopeptidase-like OS=Xenopus laevis OX=8355 GN=prepl PE=2 SV=1
Q8C167	Prolyl endopeptidase-like OS=Mus musculus OX=10090 GN=Prepl PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02897 all species →	Peptidase_S9_N	Prolyl oligopeptidase, N-terminal beta-propeller domain	Repeat	Interproscan
PF00326 all species →	Peptidase_S9	Prolyl oligopeptidase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002470 all species →	Family	Peptidase S9A, prolyl oligopeptidase	Interproscan
IPR023302 all species →	Domain	Peptidase S9A, N-terminal domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR051543 all species →	Family	Serine Peptidase S9A Subfamily	Interproscan
IPR001375 all species →	Domain	Peptidase S9, prolyl oligopeptidase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11757 all species →	PROTEASE FAMILY S9A OLIGOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2020.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.