Genomic Location: Ap13:2302826...2326117
NR annotation: CAH3043903.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.205 |
| Transcript |
| evm.model.Ap13.205 |
| Protein |
| evm.model.Ap13.205 |
| UniProt accession | Description |
|---|---|
| Q8NDG6 | ATP-dependent RNA helicase TDRD9 OS=Homo sapiens OX=9606 GN=TDRD9 PE=1 SV=3 |
| Q3MHU3 | ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus OX=10116 GN=Tdrd9 PE=2 SV=3 |
| Q14BI7 | ATP-dependent RNA helicase TDRD9 OS=Mus musculus OX=10090 GN=Tdrd9 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003306 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00567 all species → | TUDOR | Tudor domain | Domain | Interproscan |
| PF21010 all species → | HA2_C | Helicase associated domain (HA2), ratchet-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR035437 all species → | Homologous_superfamily | SNase-like, OB-fold superfamily | Interproscan |
| IPR002999 all species → | Domain | Tudor domain | Interproscan |
| IPR007502 all species → | Domain | Helicase-associated domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18934 all species → | ATP-DEPENDENT RNA HELICASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004386 all species → | Molecular Function | helicase activity | Interproscan |
| GO:0005622 all species → | Cellular Component | intracellular anatomical structure | Interproscan |
| GO:0010529 all species → | Biological Process | obsolete negative regulation of transposition | Interproscan |
evm.model.Ap13.205.Transcript abundance of evm.model.Ap13.205 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
