Gene detail

Detailed information of evm.model.Ap13.2065 in Astrangia poculata

Genomic Location: Ap13:22185068...22194597
NR annotation: XP_020623411.1, nidogen-1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2065

atgaccaacaaagtcgcgccatctgaagggtcaatagtaccggatggcacatgtgcaggagttagatgtcacccggatgctacttgcgaacagagctcaccacttggtccagtgtgcgtttgtaaggccggttaccaaggcgacggacgaaagtgctctgacatagatgaatgttcaagagatgatcatgagtgtcacctagatgcgaagtgtattaacactgtgggatcctacaactgttcctgcaagctgggttttgaaggcgatggatataactgcgagccggatgggacgtgtgcaggagttgtgtgctcagttgatgctgaatgtgtgacttcatcaagcggcgataagatctgtgaatgtaaaacaggattttcaggagatggtcgcttttgtagagattttgatgaatgcgcactgcttacccacaaatgtcacaggaagtcaacatgcatcaatcggcctgggtcctacatatgtcgatgtaatagaggatattttggcaatggtttcaactgctcaagtgacggcacgtgtgagggagtagtgtgtcactacaatgctgattgcgtgacacttaacaacagtgcggatcctgaaaaggtgtgccgatgtaaaccaggctacactggacagggatcgatttgtagtgatataaacgaatgtctggataaatcagtttgccctgataaagctgactgctttaacatggctggctcgttcatgtgccactgtctccctggttacaaaatggttggaaaaacctgtagaaaggattgtaatcgatgcctgaacggtggctcttgtactgacaataacacctgtctgtgtccccccggattttccggtgcaagatgccagtggcatggagtagcgtcgctgatcttcagcaaaggtaacagcatacagcgcatgtctcttcctcctcggcccaacaacataggagtcatttaccagcgcgcaggcgcggtacatgttggtgttgattatgattgtgtggagcagagagtgtactggaccgaggtcaccaaaggcgttatcgtgcgcgcaaagtatgacgggagcgacatggaagttgttgttaacagcgggaaaactaccagtccagaaggaattgcagtggactggttaggaaagaacatttactggacagactcgtggcttgacacaattgaagtcgccaagctcaatggaagccacagaagaactctcatctcttcggatctggtggatccaagggccatcatagttgatccacctaatggaaaaatgtactgggccgattggagccgaaaccgtccgaagatcgaagtggcaaacatggacggaaccgataggcgagtgctcgttaaatctcctcttagtcttccgaatggtttaacactcgtccattcaacaaatgaactgtgctactctgacgccggcatgtgggccatttcctgtgtaaatctaggagatttgagcatgcgtaaggcttacaacccagctccttatccgttcggcataaccaatttcaaccggacgctgttttggacagactggaccatgggaagaattcaaagaatgggaatgaactccaagattcctgataagcctctcaggtcatttgttgggagcagtggcaagatctttgatatcaaggctgtgcaaccatgtggaaggacagccgctgcaatcaagaacccctgtgctattgaaaatggcggctgcttgggattgtgtttattgaagcctaaaagccattcttgctcatgtcccaatggactacatcttgtaaggacaggaaatctaacaaggtgtcaagaaaaatgtaacggtgccttgggaatggaaaacggttttatcacagatcagcagctatcggcccactctgcctggaacgacaactatgcccgttacggcgcatcacgtgcgcgtttgtacctaaacgactggcctcaggggtggagtgcgcagaaaaatgacccgtcaccatggttacaaattgacctgcagctggcgcgaaccgtgactgcagtggcaactcaggggtatgggaacaagaaagagaatgaatgggttaaaacgtatgtgctgatgacatcacgtgacggagagagatggaactggtataaggaaggaggcagaaaacggatttttatcggaaatgttgacacgaattcagtggtacaaaacgagctgaaggtgccgctgagaactcgctggctcaggatcgtccctcgttcatggaacaatcacattggtatgcgtgtcgaattgtacggctgctga

Transcript

evm.model.Ap13.2065

ATGACCAACAAAGTCGCGCCATCTGAAGGGTCAATAGTACCGGATGGCACATGTGCAGGAGTTAGATGTCACCCGGATGCTACTTGCGAACAGAGCTCACCACTTGGTCCAGTGTGCGTTTGTAAGGCCGGTTACCAAGGCGACGGACGAAAGTGCTCTGACATAGATGAATGTTCAAGAGATGATCATGAGTGTCACCTAGATGCGAAGTGTATTAACACTGTGGGATCCTACAACTGTTCCTGCAAGCTGGGTTTTGAAGGCGATGGATATAACTGCGAGCCGGATGGGACGTGTGCAGGAGTTGTGTGCTCAGTTGATGCTGAATGTGTGACTTCATCAAGCGGCGATAAGATCTGTGAATGTAAAACAGGATTTTCAGGAGATGGTCGCTTTTGTAGAGATTTTGATGAATGCGCACTGCTTACCCACAAATGTCACAGGAAGTCAACATGCATCAATCGGCCTGGGTCCTACATATGTCGATGTAATAGAGGATATTTTGGCAATGGTTTCAACTGCTCAAGTGACGGCACGTGTGAGGGAGTAGTGTGTCACTACAATGCTGATTGCGTGACACTTAACAACAGTGCGGATCCTGAAAAGGTGTGCCGATGTAAACCAGGCTACACTGGACAGGGATCGATTTGTAGTGATATAAACGAATGTCTGGATAAATCAGTTTGCCCTGATAAAGCTGACTGCTTTAACATGGCTGGCTCGTTCATGTGCCACTGTCTCCCTGGTTACAAAATGGTTGGAAAAACCTGTAGAAAGGATTGTAATCGATGCCTGAACGGTGGCTCTTGTACTGACAATAACACCTGTCTGTGTCCCCCCGGATTTTCCGGTGCAAGATGCCAGTGGCATGGAGTAGCGTCGCTGATCTTCAGCAAAGGTAACAGCATACAGCGCATGTCTCTTCCTCCTCGGCCCAACAACATAGGAGTCATTTACCAGCGCGCAGGCGCGGTACATGTTGGTGTTGATTATGATTGTGTGGAGCAGAGAGTGTACTGGACCGAGGTCACCAAAGGCGTTATCGTGCGCGCAAAGTATGACGGGAGCGACATGGAAGTTGTTGTTAACAGCGGGAAAACTACCAGTCCAGAAGGAATTGCAGTGGACTGGTTAGGAAAGAACATTTACTGGACAGACTCGTGGCTTGACACAATTGAAGTCGCCAAGCTCAATGGAAGCCACAGAAGAACTCTCATCTCTTCGGATCTGGTGGATCCAAGGGCCATCATAGTTGATCCACCTAATGGAAAAATGTACTGGGCCGATTGGAGCCGAAACCGTCCGAAGATCGAAGTGGCAAACATGGACGGAACCGATAGGCGAGTGCTCGTTAAATCTCCTCTTAGTCTTCCGAATGGTTTAACACTCGTCCATTCAACAAATGAACTGTGCTACTCTGACGCCGGCATGTGGGCCATTTCCTGTGTAAATCTAGGAGATTTGAGCATGCGTAAGGCTTACAACCCAGCTCCTTATCCGTTCGGCATAACCAATTTCAACCGGACGCTGTTTTGGACAGACTGGACCATGGGAAGAATTCAAAGAATGGGAATGAACTCCAAGATTCCTGATAAGCCTCTCAGGTCATTTGTTGGGAGCAGTGGCAAGATCTTTGATATCAAGGCTGTGCAACCATGTGGAAGGACAGCCGCTGCAATCAAGAACCCCTGTGCTATTGAAAATGGCGGCTGCTTGGGATTGTGTTTATTGAAGCCTAAAAGCCATTCTTGCTCATGTCCCAATGGACTACATCTTGTAAGGACAGGAAATCTAACAAGGTGTCAAGAAAAATGTAACGGTGCCTTGGGAATGGAAAACGGTTTTATCACAGATCAGCAGCTATCGGCCCACTCTGCCTGGAACGACAACTATGCCCGTTACGGCGCATCACGTGCGCGTTTGTACCTAAACGACTGGCCTCAGGGGTGGAGTGCGCAGAAAAATGACCCGTCACCATGGTTACAAATTGACCTGCAGCTGGCGCGAACCGTGACTGCAGTGGCAACTCAGGGGTATGGGAACAAGAAAGAGAATGAATGGGTTAAAACGTATGTGCTGATGACATCACGTGACGGAGAGAGATGGAACTGGTATAAGGAAGGAGGCAGAAAACGGATTTTTATCGGAAATGTTGACACGAATTCAGTGGTACAAAACGAGCTGAAGGTGCCGCTGAGAACTCGCTGGCTCAGGATCGTCCCTCGTTCATGGAACAATCACATTGGTATGCGTGTCGAATTGTACGGCTGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1
P12263	Coagulation factor VIII OS=Sus scrofa OX=9823 GN=F8 PE=1 SV=2
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12946 all species →	EGF_MSP1_1	MSP1 EGF domain 1	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024730 all species →	Domain	Merozoite surface protein, EGF domain 1	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR003645 all species →	Domain	Follistatin-like, N-terminal	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2065.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.