Gene detail

Detailed information of evm.model.Ap13.2136 in Astrangia poculata

Genomic Location: Ap13:23043726...23054401
NR annotation: KAJ7330767.1, Oncoprotein-induced transcript 3 protein [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2136

atgactgcccgcatttatttccagtataaatatagttaccgcagtaatgaaacctcaattcacccacatgggattttcattgataactcacgcgtttggtccactgtagatctagacgaatgtgcaagtgcaaatcacaactgtcataaacttggtgtctgttctaacaatatcgggtcatttacatgtcactgtcagagaggatacactggaaatggaacattttgtgcagatggtcttcttggtcatttggccgaggtaacaatccgtcaaacagacacacagcctgacagtccaatcgagtttagacgcgatcagactagaatgctagtatcatcttttaacttggaaatcactgactcagaacaggcttccttccactggagaatagaaaatctgatgttgtcacccttcaatatttcagatgagccagagttgttagtgtatgacactcttgaacttaatataggaccaaagctgctgttaacagggctaaaacttgtagtgtttgagcttcatgtaactggaattgaactggctgctcgggactttgcattcctacaggtcgaaaaatcagccctcgttgcctacattgcgggaggaactgaaattatgcgatccatcaacaagccaatatctgtggatgccagttcttcctatgacccagagaatgaagacgggacttcttcaggattgaacttaaattggttctgtttcagagccgctaccaggaacagaaacgtttctggtgtcaataacacagttaccagcgtacttgtaaatgcctcaaacgatatatttaatgcacttcttgactcatccgccaatggaacactcttccaactgccagacgatgtatttatacgttccttcgaaaaaggaaaagtgcgtttagatacaaagaaactaaagaacaaccaaacatactatgtcgtgctgacaatccgcaacgattcccgtgcagccagtgttatgcaaacggttcacacttaccatggagacctcgtagacgttcgaataatgtgtattctgaactgtgtctcaccagcaagtgcatcatctggtatctccgccagaactgactgtttgtcgactcgttgtcctaaatctcttacataccgatggaaaatgttcagtaaaaacggtagttatccatattctaaatggatatccataagagatttttcaaatcttttggccactaaagtggattcaagaaatctggtcatcaagcaacaaagtcttgtacctggttcgtcgtatcgaatcacagtagatgttcagtcgccaaatggtttacacggatgggcagcgtaccagtttgaaacatcagaggccccatcaggtggaacttgtcatggcacacaactcgataaggaagccgctataggcgtctggctcaacattacctgccgtggatggaaagatgacagtttgcctctaagatatgagttctatcgtgagttagaagatggagcattatatatgttgtcatatggagtacggtcctacagtgttgtccatatttcaccttcagttggagaagatctcgtgcgtttcaaagttgctattgtcaatgtcgtgggcgtcgcaagtgaagaacgtctgtcgatcaaggttaatcgatcgtccttgacacaaagcgaagagctgctttatgtccaaataaagcaaatccttactgcgatggataattatttttctgtgggacaaattaatatggcgatccaagaagcagattctcttcttgctcttctcgatgcggctggcaatcggatcgatgaaaagtttttgctttacacgaaggactacctaatgtctaaaattttcaatgtgagggtcgataaccttgagcgattagtccagattgctgttattttgggcaaatctacggacgatgcagccgatgtgtaccagaatacgacgtttgctgttttagacaaactactggaaatgacctctctactttcattgtcgactgaacgcaggtctgaaacccgtctcattgctaatgcaggcaggtcgttattgtattgtaataccaacatcatgaaatatacctctctcagaatccttattgctaggaattctaccaactacggtcaagaaaacgaggaaatcatatggaagaccatttctgggctttgccagaatctaacagaaaagattaccaacacacttctctccctgaaagttcctggagaagaatacaccgtgataaaaaacgagcttcaatccacaatcttaggcaagcaagagtcgcgcgaattaaaccagctaacaatccaggatggaaacgctagctttgaacttccttctttggacgacaaaactctggaaaagatgctcggtaacatatctgagattggagtggagatgatcggctacaattttaacccttacacatcacacaacagcagcaaaagggtgagatcaagagtaatcagtcttgctcttaaagatgacaatggcgacactttgcaagtgacaaatctaacgtcggacattcaaatcaatatcccaatatcacatcatgacccgagtagcacttctcacccttcccacatggatgacttcctcaatcctggaagcatgaagtatcatatcatcaccgcacgcgaggttaataccacaattaaattgtccataacaatgaaaacatcggcctctgtcactgcctacataaaatttggcgatcatccgacacaaacttcatatgatgaggttattgagttatccgaagaaaatacagttaaaaacgtggtatctgattgtaaatcgacagagaaatgttcctacgatatttccattaactgcaacgtttcaggaaaatattacttcggtctcttagggaataacgaaaaccgaactgttcattcaagggaccggcggtctatactgtcagaggtagcatcgcaagagaagtgtgttaaatttaaagatcctccacctaccattccccctccagcggagtacaccatccttgtacccgagtacgaccctgacttgtcggttaactacagtttacaagtggattccatttggtgcgcgtactggtctgatactgaagagagatggacaaacgagggctgcaaggttggccaaaagtcaaacagttcgtccctgacgtgtctttgtaaccacttgaccgcatttggaggagacgttcttgttgcaccaaacaccgttgacttcgaaatggtccagcaagcatttgacaatttgagacctgctctagagatggctttgattcgacgtattcctataccagctgaatgcagcgcgtccgtgtacaacaaactcaatgaggcaaacagatattggagcaatgatgatggtaattggtataaggattacgatatcattattagcgatcagtggtaccgcttcactggggatgctggaacaatgttgccaatatattgcattccgagatatagttgcaacacgataggtactggctggatcagtggcggtggacatcccactgcattttacgagttggtgtcaagaaccgtgtgtatgcatgcccattcgagctgctgtcatatatcatatccagttgaaatacggaactgcagcggatactatgtttataagctaaaacgaccgggagacctgcgttaccgttactgtggtgttaatggcaagtatattctagaacaaataagtattaccagaagtacataa

Transcript

evm.model.Ap13.2136

ATGACTGCCCGCATTTATTTCCAGTATAAATATAGTTACCGCAGTAATGAAACCTCAATTCACCCACATGGGATTTTCATTGATAACTCACGCGTTTGGTCCACTGTAGATCTAGACGAATGTGCAAGTGCAAATCACAACTGTCATAAACTTGGTGTCTGTTCTAACAATATCGGGTCATTTACATGTCACTGTCAGAGAGGATACACTGGAAATGGAACATTTTGTGCAGATGGTCTTCTTGGTCATTTGGCCGAGGTAACAATCCGTCAAACAGACACACAGCCTGACAGTCCAATCGAGTTTAGACGCGATCAGACTAGAATGCTAGTATCATCTTTTAACTTGGAAATCACTGACTCAGAACAGGCTTCCTTCCACTGGAGAATAGAAAATCTGATGTTGTCACCCTTCAATATTTCAGATGAGCCAGAGTTGTTAGTGTATGACACTCTTGAACTTAATATAGGACCAAAGCTGCTGTTAACAGGGCTAAAACTTGTAGTGTTTGAGCTTCATGTAACTGGAATTGAACTGGCTGCTCGGGACTTTGCATTCCTACAGGTCGAAAAATCAGCCCTCGTTGCCTACATTGCGGGAGGAACTGAAATTATGCGATCCATCAACAAGCCAATATCTGTGGATGCCAGTTCTTCCTATGACCCAGAGAATGAAGACGGGACTTCTTCAGGATTGAACTTAAATTGGTTCTGTTTCAGAGCCGCTACCAGGAACAGAAACGTTTCTGGTGTCAATAACACAGTTACCAGCGTACTTGTAAATGCCTCAAACGATATATTTAATGCACTTCTTGACTCATCCGCCAATGGAACACTCTTCCAACTGCCAGACGATGTATTTATACGTTCCTTCGAAAAAGGAAAAGTGCGTTTAGATACAAAGAAACTAAAGAACAACCAAACATACTATGTCGTGCTGACAATCCGCAACGATTCCCGTGCAGCCAGTGTTATGCAAACGGTTCACACTTACCATGGAGACCTCGTAGACGTTCGAATAATGTGTATTCTGAACTGTGTCTCACCAGCAAGTGCATCATCTGGTATCTCCGCCAGAACTGACTGTTTGTCGACTCGTTGTCCTAAATCTCTTACATACCGATGGAAAATGTTCAGTAAAAACGGTAGTTATCCATATTCTAAATGGATATCCATAAGAGATTTTTCAAATCTTTTGGCCACTAAAGTGGATTCAAGAAATCTGGTCATCAAGCAACAAAGTCTTGTACCTGGTTCGTCGTATCGAATCACAGTAGATGTTCAGTCGCCAAATGGTTTACACGGATGGGCAGCGTACCAGTTTGAAACATCAGAGGCCCCATCAGGTGGAACTTGTCATGGCACACAACTCGATAAGGAAGCCGCTATAGGCGTCTGGCTCAACATTACCTGCCGTGGATGGAAAGATGACAGTTTGCCTCTAAGATATGAGTTCTATCGTGAGTTAGAAGATGGAGCATTATATATGTTGTCATATGGAGTACGGTCCTACAGTGTTGTCCATATTTCACCTTCAGTTGGAGAAGATCTCGTGCGTTTCAAAGTTGCTATTGTCAATGTCGTGGGCGTCGCAAGTGAAGAACGTCTGTCGATCAAGGTTAATCGATCGTCCTTGACACAAAGCGAAGAGCTGCTTTATGTCCAAATAAAGCAAATCCTTACTGCGATGGATAATTATTTTTCTGTGGGACAAATTAATATGGCGATCCAAGAAGCAGATTCTCTTCTTGCTCTTCTCGATGCGGCTGGCAATCGGATCGATGAAAAGTTTTTGCTTTACACGAAGGACTACCTAATGTCTAAAATTTTCAATGTGAGGGTCGATAACCTTGAGCGATTAGTCCAGATTGCTGTTATTTTGGGCAAATCTACGGACGATGCAGCCGATGTGTACCAGAATACGACGTTTGCTGTTTTAGACAAACTACTGGAAATGACCTCTCTACTTTCATTGTCGACTGAACGCAGGTCTGAAACCCGTCTCATTGCTAATGCAGGCAGGTCGTTATTGTATTGTAATACCAACATCATGAAATATACCTCTCTCAGAATCCTTATTGCTAGGAATTCTACCAACTACGGTCAAGAAAACGAGGAAATCATATGGAAGACCATTTCTGGGCTTTGCCAGAATCTAACAGAAAAGATTACCAACACACTTCTCTCCCTGAAAGTTCCTGGAGAAGAATACACCGTGATAAAAAACGAGCTTCAATCCACAATCTTAGGCAAGCAAGAGTCGCGCGAATTAAACCAGCTAACAATCCAGGATGGAAACGCTAGCTTTGAACTTCCTTCTTTGGACGACAAAACTCTGGAAAAGATGCTCGGTAACATATCTGAGATTGGAGTGGAGATGATCGGCTACAATTTTAACCCTTACACATCACACAACAGCAGCAAAAGGGTGAGATCAAGAGTAATCAGTCTTGCTCTTAAAGATGACAATGGCGACACTTTGCAAGTGACAAATCTAACGTCGGACATTCAAATCAATATCCCAATATCACATCATGACCCGAGTAGCACTTCTCACCCTTCCCACATGGATGACTTCCTCAATCCTGGAAGCATGAAGTATCATATCATCACCGCACGCGAGGTTAATACCACAATTAAATTGTCCATAACAATGAAAACATCGGCCTCTGTCACTGCCTACATAAAATTTGGCGATCATCCGACACAAACTTCATATGATGAGGTTATTGAGTTATCCGAAGAAAATACAGTTAAAAACGTGGTATCTGATTGTAAATCGACAGAGAAATGTTCCTACGATATTTCCATTAACTGCAACGTTTCAGGAAAATATTACTTCGGTCTCTTAGGGAATAACGAAAACCGAACTGTTCATTCAAGGGACCGGCGGTCTATACTGTCAGAGGTAGCATCGCAAGAGAAGTGTGTTAAATTTAAAGATCCTCCACCTACCATTCCCCCTCCAGCGGAGTACACCATCCTTGTACCCGAGTACGACCCTGACTTGTCGGTTAACTACAGTTTACAAGTGGATTCCATTTGGTGCGCGTACTGGTCTGATACTGAAGAGAGATGGACAAACGAGGGCTGCAAGGTTGGCCAAAAGTCAAACAGTTCGTCCCTGACGTGTCTTTGTAACCACTTGACCGCATTTGGAGGAGACGTTCTTGTTGCACCAAACACCGTTGACTTCGAAATGGTCCAGCAAGCATTTGACAATTTGAGACCTGCTCTAGAGATGGCTTTGATTCGACGTATTCCTATACCAGCTGAATGCAGCGCGTCCGTGTACAACAAACTCAATGAGGCAAACAGATATTGGAGCAATGATGATGGTAATTGGTATAAGGATTACGATATCATTATTAGCGATCAGTGGTACCGCTTCACTGGGGATGCTGGAACAATGTTGCCAATATATTGCATTCCGAGATATAGTTGCAACACGATAGGTACTGGCTGGATCAGTGGCGGTGGACATCCCACTGCATTTTACGAGTTGGTGTCAAGAACCGTGTGTATGCATGCCCATTCGAGCTGCTGTCATATATCATATCCAGTTGAAATACGGAACTGCAGCGGATACTATGTTTATAAGCTAAAACGACCGGGAGACCTGCGTTACCGTTACTGTGGTGTTAATGGCAAGTATATTCTAGAACAAATAAGTATTACCAGAAGTACATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009944 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2136.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.