Gene detail

Detailed information of evm.model.Ap13.2149 in Astrangia poculata

Genomic Location: Ap13:23176659...23198183
NR annotation: KAJ7330759.1, RNA binding [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2149

atggctagcgttaatccacagaggttacctatagctgcttcagtgttagcagagaacctcaatcttgacgtggatgttgttcgtacagtgataactttactggataaagaaaacacggtcccgttcattgctcgctatcgcaaagagcagaccggaggtctagaccccactgtactgcgacacattcaagctcagtatgaacagctcaaatctatcagagagcgtgcagaaaccgtcagtaaaaagataggtgagaagcttacaccagagataaaaaattcactcaacaatgcactcaccatggaagaggtggaagaagtgtatgcaccattcaagaaaggcagcaagggttcacatgcagagagagcacggcagcttggacttggtgaacccgctgagctattgctaaagaatccaaggactgttcagcttgaaaagttgatcaaaccaaatacagaaggactcaaagatgtaaagcaagtctctcttggcatacagcacattctggctgatgtgattgccaaggatagttctaccttgagctcaattaaagcaatgttggagagaaatccaatccggattgagtcatctttgtcccgctcagccacaaaggaaaagaagaatggagcaggagacaaaaaatatgaacagtatcatggcttcaacttgtcagtcgctgcactcaaggcacatcaggttcttgctttaaacagaggtgaacaaaacaaggttcttactgttaaactaaccattcccaaacctgtggaaaaccagttcctttctcatcttcataaaacatgggtgccctgtgatgctccaggaaagatacaaaagttattcaagacagcagtagatgatgcatacaacagacttattaaaccaaagatcaccagacagtccaggagttcattaaccaaacaggccgagaaagagagcgtcgacctgtttatgacgaacctgtatcgactcctcctcacccctcccatcagaggaaaaagtattcttggtctagacccaggcttctctcatgggtgcaaattagcggtgctaagttccactggcgaagtgctggagacgagggtgatctttccatttggaaaaaacgccaacgctaaacaagccaaaaacgtaatagtggaaattgttttaaagcacagttgtgactatgtagctattggaaatggcgttggatgccgggatgctgaaacatttataagtcagctcatcaagcagcgtgtgtttgcgcctctggacatctcctactgcatcgtcagcgaagatggagcttctatttacagtgcgtcgcctgaagcggcagctgagctgccgagccttgatacaagcctcaagggagctgtgtcaataggacgtagattacaggaccctctagcagaactggtgaagattgaacccaagcatttgggtattgggatgtaccaacatgacattcccgagtctttgctccgaggaggtttggacggtgtagtggaggattgtgtcagtttcgtgggagttgatttaaatgtagccggagtcagcatgttgagacggatagctggtttgaatgataagaaagcaaaagcaattctagcgtggcgggaagaaaatggcgccttcatcaaccgtgagcagctaaaggcagtcaaggggattgggctcaagtcttacgaacagtgtgttggcttcgtcagaataataaataagtcaaggctccatggcaacgctgctaaaccatccgccagcgggcacaacaggacggcggataacaacggtaaggcagcgattgttgtgttagattctgatgaggaagagaagatgacggcgcgtggcaagaaaagaaaaggcggtagcgtggaggatgaaataaagaagaagaaaaagaagaaaggtgctgaaaaacaagagttttgtccggagccattagatatgacttggattcatccagaatcttatacagtagcaaaaagtgtcattcagatgctgggtatgctgccagaacagattggtcagcctgtgatgaaaaccactatagacaagcttttacagactcgcaagattgaagaattagcgggaaagttcggcgtaggcactcccacattacaacacattatcgatggtctcagacagccaacggatcatgacatacgagtcaattttcagaaacccttgttcaaacggaacgtgacctctcttgaagaccttcatccgggaactcaccttagcggccgcgtcacgaatatgacgtcattcggggcgtttgtggactgcggagttggccgtgatggcctggtacacaacagtaacatgggacgattcaaaggcaaggtcggcctgggagatctggtcgaagtcactgttaagagtgtggatatccacaaacaacatatcggtttggttttgacggacataacatcaagtcatctggaaccgatcgacgacgccagcttaaaaatatcaggctcacgaaacgcaggcgaaaaaaacatggacgctttaccgaacaccaagacattaccctgcagcgaagaggaactgagaaaaatagtctctcagtatagaactccgttttatctttacgacaaggaaaaaatggtgaatggagccaagttcttctatgaatgtttcgcttgggtacaatcattaaccggaacacgttttaagaaccactttgcagttaggtcaacgccgactccaatgattttagaaatgcttcacgaagagtgttacatgggaatggactgcagttcactcggagagctcatgctttgtgaaaagctgggaattaaaggcgaagatgtcatgtttacttcaaacaacacccctttagcggaatatcgaaaggcttttgaaatgggtgccattatcaatttggacgactattcccaagttgacaacctgaagaaatcgttaggaggtaccatacctgacatgattgcgtttcgtttcaatccaggaccagatcacaacattaattataacgagatcattggcaaccctgttgaagcaaaatttggactgacgaaagcccagctgttcgccgcctacaagaagtgcaaagagtacggtgtgaagcgttttggattgcacacgatgatggtagcaaattctctgaatatcttggatctcgttgagaccgctcggatgatgttcacactggcggtggacatcaagaacgagacaggaatcagtgttgaattcgttaacatgggaggtggcatcggcgtgaattaccatcccgatgacaaacctatcgaccttcaagatcttggtctccgagtgaaatgcttgtatgaagaaatcgtgatgccacaccgggatcttcatccgctacagatcaagtatgaatgcggcagggtggtgaccgctgaaaatggatggctggtgtcacgtgttatcaacatgaaatacctagttagctcaattgttgtcaaagatcagcctctttcgaatgatgtccaaaagaatcttcccgatcacaagaccatagtaaacgaccgttcttacgcttgtccgaatcacgaaggtgacaaaagagaacgtatgttcgacatcgttggttccatttgcatgaataccgataaatttgctgtcgaccgggtgctgaattcaaatctagaaatcggtgatctttgcatctttcacagtacaggtgcttaa

Transcript

evm.model.Ap13.2149

ATGGCTAGCGTTAATCCACAGAGGTTACCTATAGCTGCTTCAGTGTTAGCAGAGAACCTCAATCTTGACGTGGATGTTGTTCGTACAGTGATAACTTTACTGGATAAAGAAAACACGGTCCCGTTCATTGCTCGCTATCGCAAAGAGCAGACCGGAGGTCTAGACCCCACTGTACTGCGACACATTCAAGCTCAGTATGAACAGCTCAAATCTATCAGAGAGCGTGCAGAAACCGTCAGTAAAAAGATAGGTGAGAAGCTTACACCAGAGATAAAAAATTCACTCAACAATGCACTCACCATGGAAGAGGTGGAAGAAGTGTATGCACCATTCAAGAAAGGCAGCAAGGGTTCACATGCAGAGAGAGCACGGCAGCTTGGACTTGGTGAACCCGCTGAGCTATTGCTAAAGAATCCAAGGACTGTTCAGCTTGAAAAGTTGATCAAACCAAATACAGAAGGACTCAAAGATGTAAAGCAAGTCTCTCTTGGCATACAGCACATTCTGGCTGATGTGATTGCCAAGGATAGTTCTACCTTGAGCTCAATTAAAGCAATGTTGGAGAGAAATCCAATCCGGATTGAGTCATCTTTGTCCCGCTCAGCCACAAAGGAAAAGAAGAATGGAGCAGGAGACAAAAAATATGAACAGTATCATGGCTTCAACTTGTCAGTCGCTGCACTCAAGGCACATCAGGTTCTTGCTTTAAACAGAGGTGAACAAAACAAGGTTCTTACTGTTAAACTAACCATTCCCAAACCTGTGGAAAACCAGTTCCTTTCTCATCTTCATAAAACATGGGTGCCCTGTGATGCTCCAGGAAAGATACAAAAGTTATTCAAGACAGCAGTAGATGATGCATACAACAGACTTATTAAACCAAAGATCACCAGACAGTCCAGGAGTTCATTAACCAAACAGGCCGAGAAAGAGAGCGTCGACCTGTTTATGACGAACCTGTATCGACTCCTCCTCACCCCTCCCATCAGAGGAAAAAGTATTCTTGGTCTAGACCCAGGCTTCTCTCATGGGTGCAAATTAGCGGTGCTAAGTTCCACTGGCGAAGTGCTGGAGACGAGGGTGATCTTTCCATTTGGAAAAAACGCCAACGCTAAACAAGCCAAAAACGTAATAGTGGAAATTGTTTTAAAGCACAGTTGTGACTATGTAGCTATTGGAAATGGCGTTGGATGCCGGGATGCTGAAACATTTATAAGTCAGCTCATCAAGCAGCGTGTGTTTGCGCCTCTGGACATCTCCTACTGCATCGTCAGCGAAGATGGAGCTTCTATTTACAGTGCGTCGCCTGAAGCGGCAGCTGAGCTGCCGAGCCTTGATACAAGCCTCAAGGGAGCTGTGTCAATAGGACGTAGATTACAGGACCCTCTAGCAGAACTGGTGAAGATTGAACCCAAGCATTTGGGTATTGGGATGTACCAACATGACATTCCCGAGTCTTTGCTCCGAGGAGGTTTGGACGGTGTAGTGGAGGATTGTGTCAGTTTCGTGGGAGTTGATTTAAATGTAGCCGGAGTCAGCATGTTGAGACGGATAGCTGGTTTGAATGATAAGAAAGCAAAAGCAATTCTAGCGTGGCGGGAAGAAAATGGCGCCTTCATCAACCGTGAGCAGCTAAAGGCAGTCAAGGGGATTGGGCTCAAGTCTTACGAACAGTGTGTTGGCTTCGTCAGAATAATAAATAAGTCAAGGCTCCATGGCAACGCTGCTAAACCATCCGCCAGCGGGCACAACAGGACGGCGGATAACAACGGTAAGGCAGCGATTGTTGTGTTAGATTCTGATGAGGAAGAGAAGATGACGGCGCGTGGCAAGAAAAGAAAAGGCGGTAGCGTGGAGGATGAAATAAAGAAGAAGAAAAAGAAGAAAGGTGCTGAAAAACAAGAGTTTTGTCCGGAGCCATTAGATATGACTTGGATTCATCCAGAATCTTATACAGTAGCAAAAAGTGTCATTCAGATGCTGGGTATGCTGCCAGAACAGATTGGTCAGCCTGTGATGAAAACCACTATAGACAAGCTTTTACAGACTCGCAAGATTGAAGAATTAGCGGGAAAGTTCGGCGTAGGCACTCCCACATTACAACACATTATCGATGGTCTCAGACAGCCAACGGATCATGACATACGAGTCAATTTTCAGAAACCCTTGTTCAAACGGAACGTGACCTCTCTTGAAGACCTTCATCCGGGAACTCACCTTAGCGGCCGCGTCACGAATATGACGTCATTCGGGGCGTTTGTGGACTGCGGAGTTGGCCGTGATGGCCTGGTACACAACAGTAACATGGGACGATTCAAAGGCAAGGTCGGCCTGGGAGATCTGGTCGAAGTCACTGTTAAGAGTGTGGATATCCACAAACAACATATCGGTTTGGTTTTGACGGACATAACATCAAGTCATCTGGAACCGATCGACGACGCCAGCTTAAAAATATCAGGCTCACGAAACGCAGGCGAAAAAAACATGGACGCTTTACCGAACACCAAGACATTACCCTGCAGCGAAGAGGAACTGAGAAAAATAGTCTCTCAGTATAGAACTCCGTTTTATCTTTACGACAAGGAAAAAATGGTGAATGGAGCCAAGTTCTTCTATGAATGTTTCGCTTGGGTACAATCATTAACCGGAACACGTTTTAAGAACCACTTTGCAGTTAGGTCAACGCCGACTCCAATGATTTTAGAAATGCTTCACGAAGAGTGTTACATGGGAATGGACTGCAGTTCACTCGGAGAGCTCATGCTTTGTGAAAAGCTGGGAATTAAAGGCGAAGATGTCATGTTTACTTCAAACAACACCCCTTTAGCGGAATATCGAAAGGCTTTTGAAATGGGTGCCATTATCAATTTGGACGACTATTCCCAAGTTGACAACCTGAAGAAATCGTTAGGAGGTACCATACCTGACATGATTGCGTTTCGTTTCAATCCAGGACCAGATCACAACATTAATTATAACGAGATCATTGGCAACCCTGTTGAAGCAAAATTTGGACTGACGAAAGCCCAGCTGTTCGCCGCCTACAAGAAGTGCAAAGAGTACGGTGTGAAGCGTTTTGGATTGCACACGATGATGGTAGCAAATTCTCTGAATATCTTGGATCTCGTTGAGACCGCTCGGATGATGTTCACACTGGCGGTGGACATCAAGAACGAGACAGGAATCAGTGTTGAATTCGTTAACATGGGAGGTGGCATCGGCGTGAATTACCATCCCGATGACAAACCTATCGACCTTCAAGATCTTGGTCTCCGAGTGAAATGCTTGTATGAAGAAATCGTGATGCCACACCGGGATCTTCATCCGCTACAGATCAAGTATGAATGCGGCAGGGTGGTGACCGCTGAAAATGGATGGCTGGTGTCACGTGTTATCAACATGAAATACCTAGTTAGCTCAATTGTTGTCAAAGATCAGCCTCTTTCGAATGATGTCCAAAAGAATCTTCCCGATCACAAGACCATAGTAAACGACCGTTCTTACGCTTGTCCGAATCACGAAGGTGACAAAAGAGAACGTATGTTCGACATCGTTGGTTCCATTTGCATGAATACCGATAAATTTGCTGTCGACCGGGTGCTGAATTCAAATCTAGAAATCGGTGATCTTTGCATCTTTCACAGTACAGGTGCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q497V5	S1 RNA-binding domain-containing protein 1 OS=Mus musculus OX=10090 GN=Srbd1 PE=2 SV=3
Q8N5C6	S1 RNA-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SRBD1 PE=1 SV=2
Q5RDI0	S1 RNA-binding domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SRBD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003648 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF16921 all species →	Tex_YqgF	Tex protein YqgF-like domain	Domain	Interproscan
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF09371 all species →	Tex_N	Tex-like protein N-terminal domain	Domain	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF17674 all species →	HHH_9	HHH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR023323 all species →	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR032639 all species →	Domain	Tex protein, YqgF-like domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR050437 all species →	Family	Bacterial ribosomal protein bS1	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR023319 all species →	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR018974 all species →	Domain	Tex-like protein, N-terminal	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR041692 all species →	Domain	HHH domain 9	Interproscan
IPR022657 all species →	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan
IPR006641 all species →	Domain	YqgF/RNase H-like domain	Interproscan
IPR037027 all species →	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10724 all species →	30S RIBOSOMAL PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01900	LSC2; succinyl-CoA synthetase beta subunit	EC:6.2.1.4 EC:6.2.1.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.