Gene detail

Detailed information of evm.model.Ap13.2171 in Astrangia poculata

Genomic Location: Ap13:23346090...23374225
NR annotation: KAJ7330710.1, Anaphase-promoting complex subunit 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2171

atgatcagttctgtcaaagtcgagaagtttgagccctttggcaaagccttctgtttgcagcatccatttgcttcgcctggaaatctggatgattcacgttcgaaccaagagagcaagaacgaatcgacttacaaatggaagttgcagtcattaagagaagacccagaatgccatgaagagttatttatgcaaaacaatactgttgtttggagtattggcaagtcacagagggtcagaacagtgaagaaatgttacacggccaagtctccagtgttggattgtttgtggtgtacatttcatcttccttctggacatcctggcagagaacaggacaaaggtggaccgtttcacagcctatgtgtagttcagaatgactgcattgatgtgctgactaaagatggtgctttgttcactataactctcccatttccagtaaaacaggtagtttctttacaagagggattgttacttgagaggacaacagaaccaggcgaaatggtgggccagaaaagggatgtccccacaatgtttagtgttctacatcctttggatgaaccaaggccaatcatatctaaagtgcaagcaaaaatctccaaaatttgtgacccaacagttagtgtggtgtttacatgtagtgatcctccactggttatgacgtatgactttgtcattggcttgcactcagtatggcatgtgaccaaagcaaaagctgaggattgtccagagtctccaacacatctagaccacccagcagagattcattttagtaacattcttcatcatcctactccagtgctatctgccggtgcacattctcgcctgtccgtggccactcctacacagtccttttctccctttagatcttttacacccacatcagccattagagcgcatgtacagtcccctgctccatcgcgcttgttatcaccggcattgcatcatctttctctaaacaggactatgtctcctgcaattgattcccccttaggaataggcctgagatctcctcttgccttctgctctccacctacgccctgctgttcaagcagagaggaatcatcttgggacagctttcagcccctgctgccagaagtgtgtctcagtcaggtttggcaagaaacacaaatcgctgtcagatatggtactaaagggaaagcttcaaaagtgttccttacacaagacaagtttggtgttacctttctttgctatgttctggggcaattggataaattaagaggagtacaaattactcaagaggatgactgtctatattttagcaatgcatttgaaatacctgctaaagatgctgccccattggagaaattaaacatgatgcttgtgttggagccaaatggtacgctggttatgtacagtggaatagttaagggtcgtcaagtacatttaccaatatttcccatcattgaagtggatgaattgtcacaatttaatacacatgaaaagcttttaacatttccatccattcaactgaacaagaatgatgtggaaatggaagatttggcagttaaacaatctaacacaaagtcactacaagagattaaagtcacatctctcagagattcagtatccaccacttgtaatctgtgtgactcccctggtttacctgctgctaagaaatctaaaacccaggctgaagacaatgacagtaaggcctgggagatgttaatgaagagttcttttcaccaagatgcaacaagacaaaaaattggattgcagccagtgacaaacaaagaaacgtcaaatgagatagtgcattcatttgtaacacagcttaaaaaagatgcccttctgtatcaacacattccatccattttgtttgcttggcatttgatttatgaggacctcaaactcaatttacttggaaaagactctctttatcctatggctcaattcctgtgtcgccttgcagtggatcttggcaagcatccttttgttgaatactactacagggattttccttctcttagtactggctcatgggacaatcctgctcatattacaagagaccaacagaatgagatgtttgttcctatgtgtgatgagcctcctagtattatcctttggttgcataagtatctcagaggccagcaggttgcacccttccctctgcttccaggaattaccaaaaacacattcaatgttattatgctttattcactgttcataccagtggaagatggaaatcccttaacagatggtgctgacaaactgttcacttgtattatgggctcagaagaagtgaacaacgctttcaaagaatcgtttgtcacactgcagggaaaacttaattgctttgattcggcagcagataaagtggtgacatttttggcagacagtggacgtgaagatgttgcttccatgcttttgaccgacccaaagaaactgagtacttaccgcccactcaaaaaagtgacattgaaagaaggagaaatagatgatggctttaatttggatgacgagatattaagcttacggtttggtaaagacctgcgagttccagaaataaggagactcctgcagtcttccaagcctgtcacagttaatgtcattcagaagcctgaagtcaggtacggccttgctaaatttatgtcactgagagcaggaaactcgtttactaatgatgtgcaagaggacaatgtctctaccagtgggaagataatccgcgggtcagccattggagaccgggacatggtgattgacaactccatagccctgggatttcttactggatacgaatccaaggtgatgatcaatgcacacgcagacgcagtaatgattctcggagaacctttcgccagcaacgagccatttgattttcagtcccaggacaccaccaggcgcatcaaggaactcctgccaatcatgctacgtcatcgcctgtccccaccccccgaggaaacgtactcgctccaccggaaaatgtccggatcgtttttgctgtgtgcaaaactgggcgcgtctatcgggtgcaagccattgtttgacgaagtgtggaaaaagtacaagtatgattga

Transcript

evm.model.Ap13.2171

ATGATCAGTTCTGTCAAAGTCGAGAAGTTTGAGCCCTTTGGCAAAGCCTTCTGTTTGCAGCATCCATTTGCTTCGCCTGGAAATCTGGATGATTCACGTTCGAACCAAGAGAGCAAGAACGAATCGACTTACAAATGGAAGTTGCAGTCATTAAGAGAAGACCCAGAATGCCATGAAGAGTTATTTATGCAAAACAATACTGTTGTTTGGAGTATTGGCAAGTCACAGAGGGTCAGAACAGTGAAGAAATGTTACACGGCCAAGTCTCCAGTGTTGGATTGTTTGTGGTGTACATTTCATCTTCCTTCTGGACATCCTGGCAGAGAACAGGACAAAGGTGGACCGTTTCACAGCCTATGTGTAGTTCAGAATGACTGCATTGATGTGCTGACTAAAGATGGTGCTTTGTTCACTATAACTCTCCCATTTCCAGTAAAACAGGTAGTTTCTTTACAAGAGGGATTGTTACTTGAGAGGACAACAGAACCAGGCGAAATGGTGGGCCAGAAAAGGGATGTCCCCACAATGTTTAGTGTTCTACATCCTTTGGATGAACCAAGGCCAATCATATCTAAAGTGCAAGCAAAAATCTCCAAAATTTGTGACCCAACAGTTAGTGTGGTGTTTACATGTAGTGATCCTCCACTGGTTATGACGTATGACTTTGTCATTGGCTTGCACTCAGTATGGCATGTGACCAAAGCAAAAGCTGAGGATTGTCCAGAGTCTCCAACACATCTAGACCACCCAGCAGAGATTCATTTTAGTAACATTCTTCATCATCCTACTCCAGTGCTATCTGCCGGTGCACATTCTCGCCTGTCCGTGGCCACTCCTACACAGTCCTTTTCTCCCTTTAGATCTTTTACACCCACATCAGCCATTAGAGCGCATGTACAGTCCCCTGCTCCATCGCGCTTGTTATCACCGGCATTGCATCATCTTTCTCTAAACAGGACTATGTCTCCTGCAATTGATTCCCCCTTAGGAATAGGCCTGAGATCTCCTCTTGCCTTCTGCTCTCCACCTACGCCCTGCTGTTCAAGCAGAGAGGAATCATCTTGGGACAGCTTTCAGCCCCTGCTGCCAGAAGTGTGTCTCAGTCAGGTTTGGCAAGAAACACAAATCGCTGTCAGATATGGTACTAAAGGGAAAGCTTCAAAAGTGTTCCTTACACAAGACAAGTTTGGTGTTACCTTTCTTTGCTATGTTCTGGGGCAATTGGATAAATTAAGAGGAGTACAAATTACTCAAGAGGATGACTGTCTATATTTTAGCAATGCATTTGAAATACCTGCTAAAGATGCTGCCCCATTGGAGAAATTAAACATGATGCTTGTGTTGGAGCCAAATGGTACGCTGGTTATGTACAGTGGAATAGTTAAGGGTCGTCAAGTACATTTACCAATATTTCCCATCATTGAAGTGGATGAATTGTCACAATTTAATACACATGAAAAGCTTTTAACATTTCCATCCATTCAACTGAACAAGAATGATGTGGAAATGGAAGATTTGGCAGTTAAACAATCTAACACAAAGTCACTACAAGAGATTAAAGTCACATCTCTCAGAGATTCAGTATCCACCACTTGTAATCTGTGTGACTCCCCTGGTTTACCTGCTGCTAAGAAATCTAAAACCCAGGCTGAAGACAATGACAGTAAGGCCTGGGAGATGTTAATGAAGAGTTCTTTTCACCAAGATGCAACAAGACAAAAAATTGGATTGCAGCCAGTGACAAACAAAGAAACGTCAAATGAGATAGTGCATTCATTTGTAACACAGCTTAAAAAAGATGCCCTTCTGTATCAACACATTCCATCCATTTTGTTTGCTTGGCATTTGATTTATGAGGACCTCAAACTCAATTTACTTGGAAAAGACTCTCTTTATCCTATGGCTCAATTCCTGTGTCGCCTTGCAGTGGATCTTGGCAAGCATCCTTTTGTTGAATACTACTACAGGGATTTTCCTTCTCTTAGTACTGGCTCATGGGACAATCCTGCTCATATTACAAGAGACCAACAGAATGAGATGTTTGTTCCTATGTGTGATGAGCCTCCTAGTATTATCCTTTGGTTGCATAAGTATCTCAGAGGCCAGCAGGTTGCACCCTTCCCTCTGCTTCCAGGAATTACCAAAAACACATTCAATGTTATTATGCTTTATTCACTGTTCATACCAGTGGAAGATGGAAATCCCTTAACAGATGGTGCTGACAAACTGTTCACTTGTATTATGGGCTCAGAAGAAGTGAACAACGCTTTCAAAGAATCGTTTGTCACACTGCAGGGAAAACTTAATTGCTTTGATTCGGCAGCAGATAAAGTGGTGACATTTTTGGCAGACAGTGGACGTGAAGATGTTGCTTCCATGCTTTTGACCGACCCAAAGAAACTGAGTACTTACCGCCCACTCAAAAAAGTGACATTGAAAGAAGGAGAAATAGATGATGGCTTTAATTTGGATGACGAGATATTAAGCTTACGGTTTGGTAAAGACCTGCGAGTTCCAGAAATAAGGAGACTCCTGCAGTCTTCCAAGCCTGTCACAGTTAATGTCATTCAGAAGCCTGAAGTCAGGTACGGCCTTGCTAAATTTATGTCACTGAGAGCAGGAAACTCGTTTACTAATGATGTGCAAGAGGACAATGTCTCTACCAGTGGGAAGATAATCCGCGGGTCAGCCATTGGAGACCGGGACATGGTGATTGACAACTCCATAGCCCTGGGATTTCTTACTGGATACGAATCCAAGGTGATGATCAATGCACACGCAGACGCAGTAATGATTCTCGGAGAACCTTTCGCCAGCAACGAGCCATTTGATTTTCAGTCCCAGGACACCACCAGGCGCATCAAGGAACTCCTGCCAATCATGCTACGTCATCGCCTGTCCCCACCCCCCGAGGAAACGTACTCGCTCCACCGGAAAATGTCCGGATCGTTTTTGCTGTGTGCAAAACTGGGCGCGTCTATCGGGTGCAAGCCATTGTTTGACGAAGTGTGGAAAAAGTACAAGTATGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H1A4	Anaphase-promoting complex subunit 1 OS=Homo sapiens OX=9606 GN=ANAPC1 PE=1 SV=1
P53995	Anaphase-promoting complex subunit 1 OS=Mus musculus OX=10090 GN=Anapc1 PE=1 SV=2
Q5RGU1	Atypical kinase COQ8A, mitochondrial OS=Danio rerio OX=7955 GN=coq8a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20518 all species →	Apc1_MidN	Anaphase-promoting complex subunit 1 middle domain	Repeat	Interproscan
PF12859 all species →	ANAPC1	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024990 all species →	Family	Anaphase-promoting complex subunit 1	Interproscan
IPR046794 all species →	Domain	Anaphase-promoting complex subunit 1, middle domain	Interproscan
IPR049255 all species →	Domain	Anaphase-promoting complex subunit 1, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12827 all species →	MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0007091 all species →	Biological Process	metaphase/anaphase transition of mitotic cell cycle	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2171.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.