Genomic Location: Ap13:23969781...23971479
NR annotation: XP_020615420.1, chondroitin sulfate synthase 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.2237 |
| Transcript |
| evm.model.Ap13.2237 |
| Protein |
| evm.model.Ap13.2237 |
| UniProt accession | Description |
|---|---|
| Q6ZQ11 | Chondroitin sulfate synthase 1 OS=Mus musculus OX=10090 GN=Chsy1 PE=2 SV=2 |
| Q86X52 | Chondroitin sulfate synthase 1 OS=Homo sapiens OX=9606 GN=CHSY1 PE=1 SV=3 |
| Q70JA7 | Chondroitin sulfate synthase 3 OS=Homo sapiens OX=9606 GN=CHSY3 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000773 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02434 all species → | Fringe | Fringe-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051227 all species → | Family | Chondroitin sulfate glycosyltransferase | Interproscan |
| IPR003378 all species → | Domain | Fringe-like, glycosyltransferase domain | Interproscan |
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12369 all species → | CHONDROITIN SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008376 all species → | Molecular Function | acetylgalactosaminyltransferase activity | Interproscan |
| GO:0030206 all species → | Biological Process | chondroitin sulfate biosynthetic process | Interproscan |
| GO:0047238 all species → | Molecular Function | glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016757 all species → | Molecular Function | glycosyltransferase activity | Interproscan |
evm.model.Ap13.2237.Transcript abundance of evm.model.Ap13.2237 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
