Detailed information of evm.model.Ap13.2271 in Astrangia poculata

Genomic Location: Ap13:24227312...24229480
NR annotation: KAJ7382697.1, Calmodulin-2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P05419Neo-calmodulin (Fragment) OS=Gallus gallus OX=9031 PE=2 SV=1
P04464Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3
P02597Calmodulin, striated muscle OS=Gallus gallus OX=9031 GN=CCM1 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000122 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13833
all species →		EF-hand_8EF-hand domain pairDomainInterproscan
PF13499
all species →		EF-hand_7EF-hand domain pairDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR050230
all species →		FamilyCalcium-Regulated Muscle Contraction and Cellular ProcessInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23048
all species →		MYOSIN LIGHT CHAIN 1, 3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0016460
all species →		Cellular Componentmyosin II complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02183CALM; calmodulin-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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