Detailed information of evm.model.Ap13.2290 in Astrangia poculata

Genomic Location: Ap13:24455020...24463902
NR annotation: XP_020604197.1, digestive organ expansion factor homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q642T7U3 small nucleolar RNA-associated protein 25 homolog OS=Xenopus tropicalis OX=8364 GN=utp25 PE=2 SV=1
Q8BTT6U3 small nucleolar RNA-associated protein 25 homolog OS=Mus musculus OX=10090 GN=Utp25 PE=1 SV=2
Q68CQ4U3 small nucleolar RNA-associated protein 25 homolog OS=Homo sapiens OX=9606 GN=UTP25 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000005 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF06862
all species →		UTP25Utp25, U3 small nucleolar RNA-associated SSU processome protein 25FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR010678
all species →		FamilyU3 small nucleolar RNA-associated protein 25Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19446
all species →		REVERSE TRANSCRIPTASESInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0034511
all species →		Molecular FunctionU3 snoRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.2290.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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