Gene detail

Detailed information of evm.model.Ap13.2302_evm.model.Ap13.2307 in Astrangia poculata

Genomic Location: Ap13:24560469...24619812
NR annotation: XP_027054395.1, putative deoxyribonuclease TATDN3 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U1C6	Putative deoxyribonuclease TATDN3 OS=Mus musculus OX=10090 GN=Tatdn3 PE=1 SV=1
Q17R31	Deoxyribonuclease TATDN3 OS=Homo sapiens OX=9606 GN=TATDN3 PE=1 SV=1
A1A4M4	Putative deoxyribonuclease TATDN3 OS=Bos taurus OX=9913 GN=TATDN3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003474 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018228 all species →	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46317 all species →	HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.