Detailed information of evm.model.Ap13.230_evm.model.Ap13.231 in Astrangia poculata

Genomic Location: Ap13:2557566...2588974
NR annotation: XP_020618278.1, 4-coumarate--CoA ligase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P149124-coumarate--CoA ligase 1 OS=Petroselinum crispum OX=4043 GN=4CL1 PE=2 SV=1
P149134-coumarate--CoA ligase 2 OS=Petroselinum crispum OX=4043 GN=4CL2 PE=2 SV=1
P416364-coumarate--CoA ligase OS=Pinus taeda OX=3352 GN=4CL PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000834 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13193
all species →		AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan
PF00501
all species →		AMP-bindingAMP-binding enzymeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042099
all species →		Homologous_superfamilyANL, N-terminal domainInterproscan
IPR025110
all species →		DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR020845
all species →		Conserved_siteAMP-binding, conserved siteInterproscan
IPR000873
all species →		DomainAMP-dependent synthetase/ligase domainInterproscan
IPR045851
all species →		Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24096
all species →		LONG-CHAIN-FATTY-ACID--COA LIGASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016405
all species →		Molecular FunctionCoA-ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K019044CL; 4-coumarate--CoA ligaseEC:6.2.1.12
Phenylpropanoid biosynthesisko00940deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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