Detailed information of evm.model.Ap13.233 in Astrangia poculata

Genomic Location: Ap13:2604263...2605685
NR annotation: KAJ7379783.1, tumor necrosis factor [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000499 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00229
all species →		TNFTNF(Tumour Necrosis Factor) family DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008983
all species →		Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR006052
all species →		DomainTumour necrosis factor domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11471
all species →		TUMOR NECROSIS FACTOR FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005164
all species →		Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0006955
all species →		Biological Processimmune responseInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.233.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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