Gene detail

Detailed information of evm.model.Ap13.2332 in Astrangia poculata

Genomic Location: Ap13:24864233...24877156
NR annotation: XP_027054381.1, mitochondrial import inner membrane translocase subunit TIM50-like isoform X1 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NWD4	Mitochondrial import inner membrane translocase subunit TIM50 OS=Danio rerio OX=7955 GN=timm50 PE=2 SV=2
Q3ZCQ8	Mitochondrial import inner membrane translocase subunit TIM50 OS=Homo sapiens OX=9606 GN=TIMM50 PE=1 SV=2
Q3SZB3	Mitochondrial import inner membrane translocase subunit TIM50 OS=Bos taurus OX=9913 GN=TIMM50 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006785 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005744 all species →	Cellular Component	TIM23 mitochondrial import inner membrane translocase complex	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17496	TIM50; mitochondrial import inner membrane translocase subunit TIM50	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.