Gene detail

Detailed information of evm.model.Ap13.242 in Astrangia poculata

Genomic Location: Ap13:2761763...2790052
NR annotation: XP_027038725.1, MAP/microtubule affinity-regulating kinase 3-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.242

atggaacatagtggccaagatcgaccgagggtccgcacaacgaaggtccccgatggccacagttctacatcatctagttctagaactcggaaccgcacgtccacttcgaatgcagaggaagtccacataggcaaatatcgcctgataaaaactattggtaaagggaatttcgccaaagttaaactcgccaagcatgtgccaacgggaaaggaggttgccatcaagattattgacaagacacagcttaacccgagcagcttgcaaaagttgtttcgtgaagtcaggatcatgaaatttcttgaccatcccaacatcgtaaagctgtatgaggtcatagaaactgacaagacactctaccttgtcatggagtacgctagtggaggtgaagttttcgactaccttgttgcacatggtagaatgaaagagaaggaagcaagatccaagtttagacagatcgtctcggctgtgcagtactgccatcaaaagcatgttattcacagagatctcaaggctgaaaatttacttttagatgcagacatgaacattaagatagcagattttggttttagtaatgaattcactccaggcaacaaactcgacactttttgtggaagtcccccttacgcagcaccagagctgtttcaagggaagaagtatgatggtccagaagttgatgtctggagtttaggtgtaattttatacactctagtcagcggatctcttccatttgacggacaaaatttaaaagaattaagagaaagagttctccgaggaaaatatagaatacccttttatatgtctacagactgcgagaatctattaaagagatttttagtgcttaatccaacaaaacgatctagactagagcaaattatgtcagacaaatggatgaatttaggatatgataatcatgatcttaaaccatactctgaacctacaccagattttaaagatgaaagaagaatggaaattatgcttcaaatgggattttcaagagacgagatctcagaggcactgtcaaacaatagatatgatgaggtcatggctacataccttctcttagacgagagaaggcaaaaattaacattgaatggttcaagtgatccactgatggaaaacaccagtgcaccaagaccaagtacatcgatgccctcaggtgtcccagcacccatacggccaagccgagccagtgcaagaagggagagaggagatcgggagttacctagaaggtatactgacggtcgcacacctcatggtataaccagagctgctactgaaacgggtggaacagtatcaacccaaggaaaacccatgggccgaggagaacgggatagagctggtgtggtaaagaatgccattcctaatgacgagcgagtcccatcatcaatcggacgagcttcaaatcctaacaaggcagaaataccggaacgtgcaggagatagaaatagaagaggaaagacgcaaaggcaacacagtatgccgccaggaattatcagaagaaacacgtacgtatatggggagaaacgagcagaagagagaaacagcacctcacaaacaccttcaagtcagaccaatggtaaaggagaaagtgtgacagaacctggccctagtggcagtagtgtgggggctggcagacccacttctaaacaacctccgccagaaatcggtaaccggctatcacccacacgtagatctcttccacccgtcgctattcaccaggaaaatagacatagaactgggagaacaaatcccaactccgaaatccaatcccaacctcaaccctcacggttaggaactaggaacatgactgcacgaagtactttccatagtggtcaaacacgaccccgcacccagaacggacctgatagaggagctaatgacccaatgggtcctggtggaaggccttcactccttagtaagctaacgtcaagatttagtaagagtaggcagttggacccgacagtggcaccaaggcctggtccccaaggacaacgaccgatggaacaagctctgtctccaagagaaccaagagaggtatccagagggagcataggcggcagtggacaaggggcccgaggagctagttcatccggggcaaagtccgagtatccggacccaaaggcccgttcgcatcccaggcgcaaatctctgcgtggaacgttagctagactctcgttcagaaacagaaagcacagaaaaaggtccatgaacgatacgacactcggtgagaaacctcgttctcttcgtttcacgtggagcatgaaaaccacgagttccatggacccgacggagatgatggaagaaattagaaaagtgttggaatcgaacagctgtgattatgaacagcgcgaaaattttctgttattctgttgccatggcaatcccgctgacacgaatcacgtgcagtgggaaatggaagtgtgcaaacttcctcggttgtcgttgaacggggttcgcttcaaacgcatcgccgggacttcgattaacttcaagaacatcgcgtctaaggttgcaaacgagttgaagttgtga

Transcript

evm.model.Ap13.242

ATGGAACATAGTGGCCAAGATCGACCGAGGGTCCGCACAACGAAGGTCCCCGATGGCCACAGTTCTACATCATCTAGTTCTAGAACTCGGAACCGCACGTCCACTTCGAATGCAGAGGAAGTCCACATAGGCAAATATCGCCTGATAAAAACTATTGGTAAAGGGAATTTCGCCAAAGTTAAACTCGCCAAGCATGTGCCAACGGGAAAGGAGGTTGCCATCAAGATTATTGACAAGACACAGCTTAACCCGAGCAGCTTGCAAAAGTTGTTTCGTGAAGTCAGGATCATGAAATTTCTTGACCATCCCAACATCGTAAAGCTGTATGAGGTCATAGAAACTGACAAGACACTCTACCTTGTCATGGAGTACGCTAGTGGAGGTGAAGTTTTCGACTACCTTGTTGCACATGGTAGAATGAAAGAGAAGGAAGCAAGATCCAAGTTTAGACAGATCGTCTCGGCTGTGCAGTACTGCCATCAAAAGCATGTTATTCACAGAGATCTCAAGGCTGAAAATTTACTTTTAGATGCAGACATGAACATTAAGATAGCAGATTTTGGTTTTAGTAATGAATTCACTCCAGGCAACAAACTCGACACTTTTTGTGGAAGTCCCCCTTACGCAGCACCAGAGCTGTTTCAAGGGAAGAAGTATGATGGTCCAGAAGTTGATGTCTGGAGTTTAGGTGTAATTTTATACACTCTAGTCAGCGGATCTCTTCCATTTGACGGACAAAATTTAAAAGAATTAAGAGAAAGAGTTCTCCGAGGAAAATATAGAATACCCTTTTATATGTCTACAGACTGCGAGAATCTATTAAAGAGATTTTTAGTGCTTAATCCAACAAAACGATCTAGACTAGAGCAAATTATGTCAGACAAATGGATGAATTTAGGATATGATAATCATGATCTTAAACCATACTCTGAACCTACACCAGATTTTAAAGATGAAAGAAGAATGGAAATTATGCTTCAAATGGGATTTTCAAGAGACGAGATCTCAGAGGCACTGTCAAACAATAGATATGATGAGGTCATGGCTACATACCTTCTCTTAGACGAGAGAAGGCAAAAATTAACATTGAATGGTTCAAGTGATCCACTGATGGAAAACACCAGTGCACCAAGACCAAGTACATCGATGCCCTCAGGTGTCCCAGCACCCATACGGCCAAGCCGAGCCAGTGCAAGAAGGGAGAGAGGAGATCGGGAGTTACCTAGAAGGTATACTGACGGTCGCACACCTCATGGTATAACCAGAGCTGCTACTGAAACGGGTGGAACAGTATCAACCCAAGGAAAACCCATGGGCCGAGGAGAACGGGATAGAGCTGGTGTGGTAAAGAATGCCATTCCTAATGACGAGCGAGTCCCATCATCAATCGGACGAGCTTCAAATCCTAACAAGGCAGAAATACCGGAACGTGCAGGAGATAGAAATAGAAGAGGAAAGACGCAAAGGCAACACAGTATGCCGCCAGGAATTATCAGAAGAAACACGTACGTATATGGGGAGAAACGAGCAGAAGAGAGAAACAGCACCTCACAAACACCTTCAAGTCAGACCAATGGTAAAGGAGAAAGTGTGACAGAACCTGGCCCTAGTGGCAGTAGTGTGGGGGCTGGCAGACCCACTTCTAAACAACCTCCGCCAGAAATCGGTAACCGGCTATCACCCACACGTAGATCTCTTCCACCCGTCGCTATTCACCAGGAAAATAGACATAGAACTGGGAGAACAAATCCCAACTCCGAAATCCAATCCCAACCTCAACCCTCACGGTTAGGAACTAGGAACATGACTGCACGAAGTACTTTCCATAGTGGTCAAACACGACCCCGCACCCAGAACGGACCTGATAGAGGAGCTAATGACCCAATGGGTCCTGGTGGAAGGCCTTCACTCCTTAGTAAGCTAACGTCAAGATTTAGTAAGAGTAGGCAGTTGGACCCGACAGTGGCACCAAGGCCTGGTCCCCAAGGACAACGACCGATGGAACAAGCTCTGTCTCCAAGAGAACCAAGAGAGGTATCCAGAGGGAGCATAGGCGGCAGTGGACAAGGGGCCCGAGGAGCTAGTTCATCCGGGGCAAAGTCCGAGTATCCGGACCCAAAGGCCCGTTCGCATCCCAGGCGCAAATCTCTGCGTGGAACGTTAGCTAGACTCTCGTTCAGAAACAGAAAGCACAGAAAAAGGTCCATGAACGATACGACACTCGGTGAGAAACCTCGTTCTCTTCGTTTCACGTGGAGCATGAAAACCACGAGTTCCATGGACCCGACGGAGATGATGGAAGAAATTAGAAAAGTGTTGGAATCGAACAGCTGTGATTATGAACAGCGCGAAAATTTTCTGTTATTCTGTTGCCATGGCAATCCCGCTGACACGAATCACGTGCAGTGGGAAATGGAAGTGTGCAAACTTCCTCGGTTGTCGTTGAACGGGGTTCGCTTCAAACGCATCGCCGGGACTTCGATTAACTTCAAGAACATCGCGTCTAAGGTTGCAAACGAGTTGAAGTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27448	MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens OX=9606 GN=MARK3 PE=1 SV=5
Q03141	MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus OX=10090 GN=Mark3 PE=1 SV=2
Q8VHF0	MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus OX=10116 GN=Mark3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001485 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF02149 all species →	KA1	Kinase associated domain 1	Domain	Interproscan
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001772 all species →	Domain	Kinase associated domain 1 (KA1)	Interproscan
IPR049508 all species →	Domain	Serine/threonine-protein kinase MARK 1-4, catalytic domain	Interproscan
IPR028375 all species →	Homologous_superfamily	KA1 domain/Ssp2, C-terminal	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24346 all species →	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0050321 all species →	Molecular Function	tau-protein kinase activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08798	MARK; MAP/microtubule affinity-regulating kinase	EC:2.7.11.1	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.