Gene detail

Detailed information of evm.model.Ap13.2450 in Astrangia poculata

Genomic Location: Ap13:26104489...26112268
NR annotation: KAJ7337164.1, positive regulation of extracellular matrix disassembly [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93429	Serotransferrin OS=Paralichthys olivaceus OX=8255 GN=tf PE=2 SV=1
O97490	Melanotransferrin OS=Oryctolagus cuniculus OX=9986 GN=MELTF PE=2 SV=1
Q29443	Serotransferrin OS=Bos taurus OX=9913 GN=TF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00405 all species →	Transferrin	Transferrin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001156 all species →	Domain	Transferrin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11485 all species →	TRANSFERRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006826 all species →	Biological Process	iron ion transport	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06569	MFI2, CD228; melanoma-associated antigen p97	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.