Detailed information of evm.model.Ap13.2479 in Astrangia poculata

Genomic Location: Ap13:26459585...26462966
NR annotation: KAJ7374374.1, Breast cancer metastasis-suppressor 1-like protein [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZLL9Breast cancer metastasis-suppressor 1-like protein OS=Gallus gallus OX=9031 GN=BRMS1L PE=2 SV=1
Q4V8V1Breast cancer metastasis-suppressor 1-like protein-A OS=Danio rerio OX=7955 GN=brms1la PE=2 SV=1
A4FV29Breast cancer metastasis-suppressor 1-like protein OS=Bos taurus OX=9913 GN=BRMS1L PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003628 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap13.2479. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013907
all species →		FamilySds3-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21964
all species →		BREAST CANCER METASTASIS-SUPPRESSOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0042826
all species →		Molecular Functionhistone deacetylase bindingInterproscan
GO:0070822
all species →		Cellular ComponentSin3-type complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.2479.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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