Gene detail

Detailed information of evm.model.Ap13.2497 in Astrangia poculata

Genomic Location: Ap13:26647601...26675595
NR annotation: KAJ7374330.1, E3 ubiquitin-protein ligase HTD1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2497

atggtggacgtcgatcccgacactcttttagaatggctaagtatgggacaaggcgacgaaagagacatgcagctcatcgctttggagcagttgtgtatgttgcttctcatgtcggacaacatagaccggtgtttcgaaagttgtccaccacggacattccttcccgccttgtgtcggatcttcttggatgagtgtgcacctgaaaatgtacttgaagtaaccgcaagagccattacatattaccttgatgtgtcggcagagtgtactagacggattgtggctgtggagggagccatcaaggccctgtgtagtcggctggtggtggttgatttatcgtcaaggacaagtaaagacttaggagaacaatgtgttaaagttctggaactgatatgtacccgagaggctggggctgtgtttgaagcaggtggtctccaatgttcgttaacattcatccgtgagtttgggagttctgtgcacaaggataccctacattctgcaatgaatgttgttaccagattgtgtggaagaatggagccacaggataccaacttagaaacttgtgtcaaatcactatcgaccttactaaagcacgaggacccatatgtatctgatggtgctcttcggtgctttgcatctcttgctgaccgatttacccgtcgtggcattgatcctgcccccttggcagagcatggactgagtggcgagttgttagagagactagcaagtgccgcagcttctgctggagagaaaacaggaagcagtggagccacaccagactcaaaaagcaacagtacttcagtgtctactattgttagtctgttatcaacactttgcagaggatcacccagtgttactcacgatttgttaagagctgggctgccagatgcaatccaaaaagcactccaaggtgatgagagatgtgttctggacaccatgagactggttgatctgctcttggttcttttgtttgaaggacgacgagccttgcctaagtcatgcgtcagtattcccaagggagggatttctggtcttcggaggtttgacagttcaaatgagaggtcacacagacagcttattgactgcatcagaagcaaggatacagatgcagtaatagatgctattgaaaatggtggatttgaggtgaactttatggatgatgttggacagacattgcttaactgggcatctgcatttggaaccttagaaatggtggaatatctttgtgagcgaggtgcagatgtcaataggggtcaaagatcctcatctcttcactatgctgcctgctttggaagaccagctgttgcaaaaactttgcttcggcatggtgccaacccagatttaagagacgaagatggcaaaactccaatggacaaggctagagagcgaaatgatgaaggacacagagaagttgtacatattcttcaatcaccgggtgaatggatggcgcctgttggaaacagtgcttctgcttcatcctctacaccatcagcacaaccagctgccactcaagattccaccaatgccgaggagaagaaagaagagccagaggatgtaaagggagacccagaaatggctcccatctacctcaagaatctcctgccactgtttgccaagaactacaaggagacaatgatgccaagcattagaaaggcaaccttagccttgatgcgtaaaatgatccactatgcatctcaagctcaactggaggagctgtcgcagaattcaacgtttgcctcagttatagtggaggtcctgtcagttgtcttggatcatgaggatgatgacgatggccatttaacagccctgcagatcatagaggacttgttagagaagtgccaggagacatacatcagtcacttggctcgtctgggagtcatcagccatgtggcagagctggcaggaccactgcaggaggtggaagcagtacaagaggaaccagaggtgaaaggaaatgaagaggagacagagaaaaaggaagaagaaactgtccaggaagatgctggcgagatagaacaaggcaagccatatcactggcatgactggtgcattgtgcgcagccgtgactgcctctatctgtggaatgaatcctgtgctttggagctttctaatggcagtaatggttggtttaggttcattttggatggaaaactggccaccatgtactcaagcggcagccctgaagggggttcagactcatctgagagcagaggagaattccttgaaaaactccaaagggcccgtggtcaggtgaagcttggaaccccaagccaaccactcctgtcttcagttggctccactcgactctctgtaggcaactggtctctcgcatgcaccaaagacaaggaagtatccgtacacaatgctgatgggcaacaagcgaccattcttcgtgaagacttagctggctttgtctttgaatcaaacagagggacaaagcacaccttcaatgccgagacatccctgggacccgagtttgctgctggctggttgggaaagagaggaaagcgatttgtgtcgaagattgaggctcagaaactgaagatcagaaacttagctgctgagattcaagagaagtatctgctagccgcacaagcagcacctcgtgaagttgtggccaagttgcaggaaattgttacacagctgcattcggcatgtttatctcaagaaaatcttaccaagggaggagaaagtaaagaatcttggaaggaagaaatgtttggtgccttgaaaggcttgttgcaggtacttcaagatgatgccactgtttcatcatatgaactacaatctactggactggtcacagctcttctacgttgcctacaccagactggcaaagcaatatcttctgacaatgaaaacactagcaatcgtgctgcagaatgcatcgctgaaagaattgaagtgttcaagtcagcttttggtgaaactgaggagcaactgaaccaggaaaaaagcggtgaagttacatctgcctcgatccttgttaagaagctcgtggctgttttagagtcaacagagaagttgcctgttttcacttatgaatgccctggatcaggtcttcaggtgttggcaaggcgactaaggttccagttagaacgagctccaggagagagttctctgatagatagaacaggaagaacgttgaaaatggagccgctggcgactgtaggagacttagaacgataccttttaaaaatggttgccaaacagtggtatgactacgacagaagtagctatcactttgtgcgtctccttagaggaggcaacaagatgaccttcacacacatgcaggactttgacgagaacggcatcctgtactggcttggtacaaacggcaagtctattcctgactggatcaacccaggctcggttggaattgtaaatgcatggtttgccattgatcttggcgtgtggttcataccaacttgttacactctcagacacgctcgtggctatggaaggtctgctcttcgtaactggctttttcaagtaagcaaggatgggaagaactggacaacactgtacacacatacagacgacaactctcttaatgaacccgggtccacagcatcctggccgctagagcctccctcagaccaagagggctggcgatatgttcgtttgcagcaggctggtaaaaatgccagtggtcagactcattatctgtctctgtctggatttgaggtgtatggaacagtactgggagctgtggaagaaccgttaggcccagagcagtcatctcccaagggtgtcactgccggcgacaaactggccaagtcactgaagccctgctggtctctgtgccctggtaaagctgcacgggaggtggaagccgccttacgtcgccaacgccgcctcattcgctcgcagatgctgaagcacctgaatgtgggcagcaaggtggtccgtggcatggactggaagtggaaagaccaggatggaagtccccctggtgaaggcctggtgactggagaactgcagaacggttgggttgaagtggcatggacaaatggtacctcgaactcttatcgcatgggagcggatggcaaattcgacttgagagtggtagagcctattccttcttcagaatcggctggagaatcatcatcttctacccctggcgaagaaggacattctgaagagggaccttccactgaggagcctgaagttgtctcacccgagaaacctcaacaggaaagttccacgacgtcccaaactgctgatgtgtccagcgatgtgttagttgaagccgtacgagtcgaggagatcccggatgaaggtatatttacctcagatgacatcattgacacgcctggcaatgtagtggtcgtatcagagacatcggcgggcagcgcggagccagtgcagagtgttgctgatgaaccaaaagagactgtgggtgaaatagtagaggtcacagaggaagaggcagtcactagtgaacctgcaaaccatccagcggtgccaactacaagctccaacactgagtctgttaacatttctgtgggagaaactgcaagaaggttattaagctcagccgtgaacgcagccaactcaccaggcagcaggctgtccagagcctctgacctggacatgtacgtggccatgagaggctcaggactgctgacgggactggaggatgattacgaccttcctgaaccagatgatgatgatgatgatgacgatgatgatgacgatgatgatgagaatgacgaagagaacgaggatgattatgaggttgaagaggagcccgagtcacgtggtgggcgtcggcgcacgtgggatgacgagcacgtgcttaaaagacagttttcagctctggtgcctgcgtttgacccgcgaccaggaagaaccaacattgcacagacccaggatattgtcattcccgcgccaggtaaagtgtttgagtga

Transcript

evm.model.Ap13.2497

ATGGTGGACGTCGATCCCGACACTCTTTTAGAATGGCTAAGTATGGGACAAGGCGACGAAAGAGACATGCAGCTCATCGCTTTGGAGCAGTTGTGTATGTTGCTTCTCATGTCGGACAACATAGACCGGTGTTTCGAAAGTTGTCCACCACGGACATTCCTTCCCGCCTTGTGTCGGATCTTCTTGGATGAGTGTGCACCTGAAAATGTACTTGAAGTAACCGCAAGAGCCATTACATATTACCTTGATGTGTCGGCAGAGTGTACTAGACGGATTGTGGCTGTGGAGGGAGCCATCAAGGCCCTGTGTAGTCGGCTGGTGGTGGTTGATTTATCGTCAAGGACAAGTAAAGACTTAGGAGAACAATGTGTTAAAGTTCTGGAACTGATATGTACCCGAGAGGCTGGGGCTGTGTTTGAAGCAGGTGGTCTCCAATGTTCGTTAACATTCATCCGTGAGTTTGGGAGTTCTGTGCACAAGGATACCCTACATTCTGCAATGAATGTTGTTACCAGATTGTGTGGAAGAATGGAGCCACAGGATACCAACTTAGAAACTTGTGTCAAATCACTATCGACCTTACTAAAGCACGAGGACCCATATGTATCTGATGGTGCTCTTCGGTGCTTTGCATCTCTTGCTGACCGATTTACCCGTCGTGGCATTGATCCTGCCCCCTTGGCAGAGCATGGACTGAGTGGCGAGTTGTTAGAGAGACTAGCAAGTGCCGCAGCTTCTGCTGGAGAGAAAACAGGAAGCAGTGGAGCCACACCAGACTCAAAAAGCAACAGTACTTCAGTGTCTACTATTGTTAGTCTGTTATCAACACTTTGCAGAGGATCACCCAGTGTTACTCACGATTTGTTAAGAGCTGGGCTGCCAGATGCAATCCAAAAAGCACTCCAAGGTGATGAGAGATGTGTTCTGGACACCATGAGACTGGTTGATCTGCTCTTGGTTCTTTTGTTTGAAGGACGACGAGCCTTGCCTAAGTCATGCGTCAGTATTCCCAAGGGAGGGATTTCTGGTCTTCGGAGGTTTGACAGTTCAAATGAGAGGTCACACAGACAGCTTATTGACTGCATCAGAAGCAAGGATACAGATGCAGTAATAGATGCTATTGAAAATGGTGGATTTGAGGTGAACTTTATGGATGATGTTGGACAGACATTGCTTAACTGGGCATCTGCATTTGGAACCTTAGAAATGGTGGAATATCTTTGTGAGCGAGGTGCAGATGTCAATAGGGGTCAAAGATCCTCATCTCTTCACTATGCTGCCTGCTTTGGAAGACCAGCTGTTGCAAAAACTTTGCTTCGGCATGGTGCCAACCCAGATTTAAGAGACGAAGATGGCAAAACTCCAATGGACAAGGCTAGAGAGCGAAATGATGAAGGACACAGAGAAGTTGTACATATTCTTCAATCACCGGGTGAATGGATGGCGCCTGTTGGAAACAGTGCTTCTGCTTCATCCTCTACACCATCAGCACAACCAGCTGCCACTCAAGATTCCACCAATGCCGAGGAGAAGAAAGAAGAGCCAGAGGATGTAAAGGGAGACCCAGAAATGGCTCCCATCTACCTCAAGAATCTCCTGCCACTGTTTGCCAAGAACTACAAGGAGACAATGATGCCAAGCATTAGAAAGGCAACCTTAGCCTTGATGCGTAAAATGATCCACTATGCATCTCAAGCTCAACTGGAGGAGCTGTCGCAGAATTCAACGTTTGCCTCAGTTATAGTGGAGGTCCTGTCAGTTGTCTTGGATCATGAGGATGATGACGATGGCCATTTAACAGCCCTGCAGATCATAGAGGACTTGTTAGAGAAGTGCCAGGAGACATACATCAGTCACTTGGCTCGTCTGGGAGTCATCAGCCATGTGGCAGAGCTGGCAGGACCACTGCAGGAGGTGGAAGCAGTACAAGAGGAACCAGAGGTGAAAGGAAATGAAGAGGAGACAGAGAAAAAGGAAGAAGAAACTGTCCAGGAAGATGCTGGCGAGATAGAACAAGGCAAGCCATATCACTGGCATGACTGGTGCATTGTGCGCAGCCGTGACTGCCTCTATCTGTGGAATGAATCCTGTGCTTTGGAGCTTTCTAATGGCAGTAATGGTTGGTTTAGGTTCATTTTGGATGGAAAACTGGCCACCATGTACTCAAGCGGCAGCCCTGAAGGGGGTTCAGACTCATCTGAGAGCAGAGGAGAATTCCTTGAAAAACTCCAAAGGGCCCGTGGTCAGGTGAAGCTTGGAACCCCAAGCCAACCACTCCTGTCTTCAGTTGGCTCCACTCGACTCTCTGTAGGCAACTGGTCTCTCGCATGCACCAAAGACAAGGAAGTATCCGTACACAATGCTGATGGGCAACAAGCGACCATTCTTCGTGAAGACTTAGCTGGCTTTGTCTTTGAATCAAACAGAGGGACAAAGCACACCTTCAATGCCGAGACATCCCTGGGACCCGAGTTTGCTGCTGGCTGGTTGGGAAAGAGAGGAAAGCGATTTGTGTCGAAGATTGAGGCTCAGAAACTGAAGATCAGAAACTTAGCTGCTGAGATTCAAGAGAAGTATCTGCTAGCCGCACAAGCAGCACCTCGTGAAGTTGTGGCCAAGTTGCAGGAAATTGTTACACAGCTGCATTCGGCATGTTTATCTCAAGAAAATCTTACCAAGGGAGGAGAAAGTAAAGAATCTTGGAAGGAAGAAATGTTTGGTGCCTTGAAAGGCTTGTTGCAGGTACTTCAAGATGATGCCACTGTTTCATCATATGAACTACAATCTACTGGACTGGTCACAGCTCTTCTACGTTGCCTACACCAGACTGGCAAAGCAATATCTTCTGACAATGAAAACACTAGCAATCGTGCTGCAGAATGCATCGCTGAAAGAATTGAAGTGTTCAAGTCAGCTTTTGGTGAAACTGAGGAGCAACTGAACCAGGAAAAAAGCGGTGAAGTTACATCTGCCTCGATCCTTGTTAAGAAGCTCGTGGCTGTTTTAGAGTCAACAGAGAAGTTGCCTGTTTTCACTTATGAATGCCCTGGATCAGGTCTTCAGGTGTTGGCAAGGCGACTAAGGTTCCAGTTAGAACGAGCTCCAGGAGAGAGTTCTCTGATAGATAGAACAGGAAGAACGTTGAAAATGGAGCCGCTGGCGACTGTAGGAGACTTAGAACGATACCTTTTAAAAATGGTTGCCAAACAGTGGTATGACTACGACAGAAGTAGCTATCACTTTGTGCGTCTCCTTAGAGGAGGCAACAAGATGACCTTCACACACATGCAGGACTTTGACGAGAACGGCATCCTGTACTGGCTTGGTACAAACGGCAAGTCTATTCCTGACTGGATCAACCCAGGCTCGGTTGGAATTGTAAATGCATGGTTTGCCATTGATCTTGGCGTGTGGTTCATACCAACTTGTTACACTCTCAGACACGCTCGTGGCTATGGAAGGTCTGCTCTTCGTAACTGGCTTTTTCAAGTAAGCAAGGATGGGAAGAACTGGACAACACTGTACACACATACAGACGACAACTCTCTTAATGAACCCGGGTCCACAGCATCCTGGCCGCTAGAGCCTCCCTCAGACCAAGAGGGCTGGCGATATGTTCGTTTGCAGCAGGCTGGTAAAAATGCCAGTGGTCAGACTCATTATCTGTCTCTGTCTGGATTTGAGGTGTATGGAACAGTACTGGGAGCTGTGGAAGAACCGTTAGGCCCAGAGCAGTCATCTCCCAAGGGTGTCACTGCCGGCGACAAACTGGCCAAGTCACTGAAGCCCTGCTGGTCTCTGTGCCCTGGTAAAGCTGCACGGGAGGTGGAAGCCGCCTTACGTCGCCAACGCCGCCTCATTCGCTCGCAGATGCTGAAGCACCTGAATGTGGGCAGCAAGGTGGTCCGTGGCATGGACTGGAAGTGGAAAGACCAGGATGGAAGTCCCCCTGGTGAAGGCCTGGTGACTGGAGAACTGCAGAACGGTTGGGTTGAAGTGGCATGGACAAATGGTACCTCGAACTCTTATCGCATGGGAGCGGATGGCAAATTCGACTTGAGAGTGGTAGAGCCTATTCCTTCTTCAGAATCGGCTGGAGAATCATCATCTTCTACCCCTGGCGAAGAAGGACATTCTGAAGAGGGACCTTCCACTGAGGAGCCTGAAGTTGTCTCACCCGAGAAACCTCAACAGGAAAGTTCCACGACGTCCCAAACTGCTGATGTGTCCAGCGATGTGTTAGTTGAAGCCGTACGAGTCGAGGAGATCCCGGATGAAGGTATATTTACCTCAGATGACATCATTGACACGCCTGGCAATGTAGTGGTCGTATCAGAGACATCGGCGGGCAGCGCGGAGCCAGTGCAGAGTGTTGCTGATGAACCAAAAGAGACTGTGGGTGAAATAGTAGAGGTCACAGAGGAAGAGGCAGTCACTAGTGAACCTGCAAACCATCCAGCGGTGCCAACTACAAGCTCCAACACTGAGTCTGTTAACATTTCTGTGGGAGAAACTGCAAGAAGGTTATTAAGCTCAGCCGTGAACGCAGCCAACTCACCAGGCAGCAGGCTGTCCAGAGCCTCTGACCTGGACATGTACGTGGCCATGAGAGGCTCAGGACTGCTGACGGGACTGGAGGATGATTACGACCTTCCTGAACCAGATGATGATGATGATGATGACGATGATGATGACGATGATGATGAGAATGACGAAGAGAACGAGGATGATTATGAGGTTGAAGAGGAGCCCGAGTCACGTGGTGGGCGTCGGCGCACGTGGGATGACGAGCACGTGCTTAAAAGACAGTTTTCAGCTCTGGTGCCTGCGTTTGACCCGCGACCAGGAAGAACCAACATTGCACAGACCCAGGATATTGTCATTCCCGCGCCAGGTAAAGTGTTTGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULT8	E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=4
Q69ZR2	E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2
Q9VL06	E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003326 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07738 all species →	Sad1_UNC	Sad1 / UNC-like C-terminal	Family	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR012919 all species →	Domain	SUN domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045322 all species →	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2497.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.