Gene detail

Detailed information of evm.model.Ap13.2562 in Astrangia poculata

Genomic Location: Ap13:27252873...27281186
NR annotation: XP_022801614.1, symplekin-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2562

atggcggccgacggtcgaactcgtgttcgactctcggtagcttctcagttcttccacaacgatgatacagacacacttgtggcatcaggagaatattctgctgaagactccacttccgaaaaggtcattgatttacttaatcaagcccagctggaaaaggaaaacaaattaaactgtctaaaacaggtacaagagtttattgtcaataaagaccccacacttctggataactttttggatgaaatcctagtgttccagcaagacagatcagcagatgtgcgtagatttgtggttggatttattgaggaagcatgcaagaaggacattgagttgctgagtaaagtgcaaggcactctagcgtttatgctgaacgacgaaaatgttgctgtacaaaagcgagtcatgctgtgtgttacacagctgtacaaatatgctcttcagtatatctgtaaacaaaaagcaatatcggaagagctggaacatgtgtgggagcaacttattcagattaaagaacagatcatagatatgctagagtctgacaatgatggaattagaactcatgctataaagtttatggagatgcttgttcttgtccagtcactcaaaactcaggattctgagtcattgaagaaaggtgaggcagacatttcactggaaatagtccccagaaatcatcctttagtcaagatgacagagctaagagaagaaggtggatctacactggaatctttgcttactcttattgcctcccataccatctccagtgtgaacctgatggcctcccttggatctctgtcagctatagctcgtcaaagacctgccttcatggcaatcgttgttcaagcatttgagtctcttcacgcaaaccttcccacctctctgagcaaatctcaagtcagcagcgtgaggaaaaatctcaagcttcatctgatgagtttgctcaaacatccatcatcagttgagtttcttccccagatcacaacactcttaacagatcttggggcttcacaagctgagctgcaaaggaacatgccaaaagtcagcgcagaaaagaaacggcctgaacctgaagctgtaactacgaaaaagcaaaaacttgatactgaagagatagagaccatgtccacctcagatgctgttgacatgacagcgcaggatattattccgaggctaaacaaagacactgtgacagacctagtgctggttagcatgttagctcttcctgacagccttccatctcactttcacgacacatacacccccattgctgcagcaggaggacaggctcaagtcgtccatcttgccaggctgttggcaacccagatgaatgctgctaggattggtaaaggatatgagcgaatggaggccttgagaaaggctcagaatgacccgagaatgaaagaagcagagagcatgtcaattcctgtcattggtggggctggttcttgggggaacaatatacctggtattgaagaggatcccacatttatgtttgctgtaccaaaacctgaggaggattccgcgctgaaaagaatgctgggtggacattttgatgtaaataaagagaagagacctttggatataaagaagacaccatttgttcccaaagaacctactgttcctcagctgcgcatgaggaaaatcaaaccgttcaaattagctgacgtgactaggattctgaatccagaggagagacttagaatgatgacaggggcagtgaacagaatacttgcagctgaaaatagtgcagctaggagtggagtaagccaggaacatatcaacctcattgttggacttatcacacaactgggtggtgatttaaggcttgttcttcaagagttcattctggaagatatcagacctcgctatgaactgttaatgtcatggctgtatcaggaatatgcagcagcagaaggaagtgaaatgcctggagatgagcacgagttacgacagtcttacagtgaatgtctactgaatcttatggacggattgtactccaagctggatgccaaggacaaattatttactcgcattctgctggacataccgtcactaacagacggttcagtaatggccgtcaggatgtactgtgaagacttggaacgtcttcaagttggattttccacgctgagagaactaaccttaaaacgacctgcggcccagcaacagttgctacaaactctgctggagctaaccacaaacgagaaggaacaggttcgagtgcaggccatacactcagccaagaaacttcacacgagacaagaactagcggaatctattgagaaatacgcgttgagttctttacagcagttgttagctgaccacccacctgccccagaagggttggaccctgacacagaagttgctcctggcgagtggaccgacgatacaattaaactttgtctttatctatatcttgcactgcttcctcaaaaccacaaactctttcacgaattagctaaagtgtacacagcttcctcgcagatcatcaaaagaatcattcttagacaccttgaacatcccgttcgtgctatcggtatggcatctcctgagctcttacagttggtagagaactgtcctacaggcgctgaaacacttatagctaggatccttaatattatcactgacaaagcggtacccacagctgagctggtcaagcgagtcaaggagctgtatcacaaacgcgtttcagatgtacggttcttgattcctgtactcactggtctgaagaaacaggaaattattgccgtgctgcctaaactgatcaaacagtcacccagcgtggtcaaggaagtgtttaataggctactgggatgcttccatagtgactcgaaagtgtccgccaccagtcccctcagtccgtccgaacttctggtcgctcttcatcaaatcgaggctaagagcgacatgaagtctgttatgaaagccagcagtctgtgttttgcggagaagacgatttacactcaggaggtgttggcagtagttcttcatcagttgatggagatgaatcctctccctaccttgttcatgagaacggtgatccagtccctcagcatatgtcctcgactggttggttttgtcatgaacatactcgctaaattgatcaccaaacaggtctggaaacagccaaaagtttggcagggatttgtcaagtgttgtcagatgaccaagccccagtccttttcggttctccttcagctcccttcacgtcagttggagagtgtgtttgagatttgtccagaactcaaggaaaacctggttgcgcatgtccagtcgttcactcctcaccagcgcgcccatataccaagatcattacttcagatcttagagaaggacggaaagaaggacgagaaaaaacctaaacaagaaaaaccagacaaagagcagatcgaccctgaagaggaagacgacgactcgacgaaggacgacaaatctccgaagcggacacgatcacacacgagggaatcactgaaggacaaacgaaagtcgcgcagatcacgctctcgctccaggtcaccgccgcgaaagaaacgcgagaaaagcgctggggaggagagtgcgagtgaaggagaaataaactaa

Transcript

evm.model.Ap13.2562

ATGGCGGCCGACGGTCGAACTCGTGTTCGACTCTCGGTAGCTTCTCAGTTCTTCCACAACGATGATACAGACACACTTGTGGCATCAGGAGAATATTCTGCTGAAGACTCCACTTCCGAAAAGGTCATTGATTTACTTAATCAAGCCCAGCTGGAAAAGGAAAACAAATTAAACTGTCTAAAACAGGTACAAGAGTTTATTGTCAATAAAGACCCCACACTTCTGGATAACTTTTTGGATGAAATCCTAGTGTTCCAGCAAGACAGATCAGCAGATGTGCGTAGATTTGTGGTTGGATTTATTGAGGAAGCATGCAAGAAGGACATTGAGTTGCTGAGTAAAGTGCAAGGCACTCTAGCGTTTATGCTGAACGACGAAAATGTTGCTGTACAAAAGCGAGTCATGCTGTGTGTTACACAGCTGTACAAATATGCTCTTCAGTATATCTGTAAACAAAAAGCAATATCGGAAGAGCTGGAACATGTGTGGGAGCAACTTATTCAGATTAAAGAACAGATCATAGATATGCTAGAGTCTGACAATGATGGAATTAGAACTCATGCTATAAAGTTTATGGAGATGCTTGTTCTTGTCCAGTCACTCAAAACTCAGGATTCTGAGTCATTGAAGAAAGGTGAGGCAGACATTTCACTGGAAATAGTCCCCAGAAATCATCCTTTAGTCAAGATGACAGAGCTAAGAGAAGAAGGTGGATCTACACTGGAATCTTTGCTTACTCTTATTGCCTCCCATACCATCTCCAGTGTGAACCTGATGGCCTCCCTTGGATCTCTGTCAGCTATAGCTCGTCAAAGACCTGCCTTCATGGCAATCGTTGTTCAAGCATTTGAGTCTCTTCACGCAAACCTTCCCACCTCTCTGAGCAAATCTCAAGTCAGCAGCGTGAGGAAAAATCTCAAGCTTCATCTGATGAGTTTGCTCAAACATCCATCATCAGTTGAGTTTCTTCCCCAGATCACAACACTCTTAACAGATCTTGGGGCTTCACAAGCTGAGCTGCAAAGGAACATGCCAAAAGTCAGCGCAGAAAAGAAACGGCCTGAACCTGAAGCTGTAACTACGAAAAAGCAAAAACTTGATACTGAAGAGATAGAGACCATGTCCACCTCAGATGCTGTTGACATGACAGCGCAGGATATTATTCCGAGGCTAAACAAAGACACTGTGACAGACCTAGTGCTGGTTAGCATGTTAGCTCTTCCTGACAGCCTTCCATCTCACTTTCACGACACATACACCCCCATTGCTGCAGCAGGAGGACAGGCTCAAGTCGTCCATCTTGCCAGGCTGTTGGCAACCCAGATGAATGCTGCTAGGATTGGTAAAGGATATGAGCGAATGGAGGCCTTGAGAAAGGCTCAGAATGACCCGAGAATGAAAGAAGCAGAGAGCATGTCAATTCCTGTCATTGGTGGGGCTGGTTCTTGGGGGAACAATATACCTGGTATTGAAGAGGATCCCACATTTATGTTTGCTGTACCAAAACCTGAGGAGGATTCCGCGCTGAAAAGAATGCTGGGTGGACATTTTGATGTAAATAAAGAGAAGAGACCTTTGGATATAAAGAAGACACCATTTGTTCCCAAAGAACCTACTGTTCCTCAGCTGCGCATGAGGAAAATCAAACCGTTCAAATTAGCTGACGTGACTAGGATTCTGAATCCAGAGGAGAGACTTAGAATGATGACAGGGGCAGTGAACAGAATACTTGCAGCTGAAAATAGTGCAGCTAGGAGTGGAGTAAGCCAGGAACATATCAACCTCATTGTTGGACTTATCACACAACTGGGTGGTGATTTAAGGCTTGTTCTTCAAGAGTTCATTCTGGAAGATATCAGACCTCGCTATGAACTGTTAATGTCATGGCTGTATCAGGAATATGCAGCAGCAGAAGGAAGTGAAATGCCTGGAGATGAGCACGAGTTACGACAGTCTTACAGTGAATGTCTACTGAATCTTATGGACGGATTGTACTCCAAGCTGGATGCCAAGGACAAATTATTTACTCGCATTCTGCTGGACATACCGTCACTAACAGACGGTTCAGTAATGGCCGTCAGGATGTACTGTGAAGACTTGGAACGTCTTCAAGTTGGATTTTCCACGCTGAGAGAACTAACCTTAAAACGACCTGCGGCCCAGCAACAGTTGCTACAAACTCTGCTGGAGCTAACCACAAACGAGAAGGAACAGGTTCGAGTGCAGGCCATACACTCAGCCAAGAAACTTCACACGAGACAAGAACTAGCGGAATCTATTGAGAAATACGCGTTGAGTTCTTTACAGCAGTTGTTAGCTGACCACCCACCTGCCCCAGAAGGGTTGGACCCTGACACAGAAGTTGCTCCTGGCGAGTGGACCGACGATACAATTAAACTTTGTCTTTATCTATATCTTGCACTGCTTCCTCAAAACCACAAACTCTTTCACGAATTAGCTAAAGTGTACACAGCTTCCTCGCAGATCATCAAAAGAATCATTCTTAGACACCTTGAACATCCCGTTCGTGCTATCGGTATGGCATCTCCTGAGCTCTTACAGTTGGTAGAGAACTGTCCTACAGGCGCTGAAACACTTATAGCTAGGATCCTTAATATTATCACTGACAAAGCGGTACCCACAGCTGAGCTGGTCAAGCGAGTCAAGGAGCTGTATCACAAACGCGTTTCAGATGTACGGTTCTTGATTCCTGTACTCACTGGTCTGAAGAAACAGGAAATTATTGCCGTGCTGCCTAAACTGATCAAACAGTCACCCAGCGTGGTCAAGGAAGTGTTTAATAGGCTACTGGGATGCTTCCATAGTGACTCGAAAGTGTCCGCCACCAGTCCCCTCAGTCCGTCCGAACTTCTGGTCGCTCTTCATCAAATCGAGGCTAAGAGCGACATGAAGTCTGTTATGAAAGCCAGCAGTCTGTGTTTTGCGGAGAAGACGATTTACACTCAGGAGGTGTTGGCAGTAGTTCTTCATCAGTTGATGGAGATGAATCCTCTCCCTACCTTGTTCATGAGAACGGTGATCCAGTCCCTCAGCATATGTCCTCGACTGGTTGGTTTTGTCATGAACATACTCGCTAAATTGATCACCAAACAGGTCTGGAAACAGCCAAAAGTTTGGCAGGGATTTGTCAAGTGTTGTCAGATGACCAAGCCCCAGTCCTTTTCGGTTCTCCTTCAGCTCCCTTCACGTCAGTTGGAGAGTGTGTTTGAGATTTGTCCAGAACTCAAGGAAAACCTGGTTGCGCATGTCCAGTCGTTCACTCCTCACCAGCGCGCCCATATACCAAGATCATTACTTCAGATCTTAGAGAAGGACGGAAAGAAGGACGAGAAAAAACCTAAACAAGAAAAACCAGACAAAGAGCAGATCGACCCTGAAGAGGAAGACGACGACTCGACGAAGGACGACAAATCTCCGAAGCGGACACGATCACACACGAGGGAATCACTGAAGGACAAACGAAAGTCGCGCAGATCACGCTCTCGCTCCAGGTCACCGCCGCGAAAGAAACGCGAGAAAAGCGCTGGGGAGGAGAGTGCGAGTGAAGGAGAAATAAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92797	Symplekin OS=Homo sapiens OX=9606 GN=SYMPK PE=1 SV=2
Q80X82	Symplekin OS=Mus musculus OX=10090 GN=Sympk PE=1 SV=2
Q7ZYV9	Symplekin OS=Xenopus laevis OX=8355 GN=sympk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003954 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11935 all species →	SYMPK_PTA1_N	Symplekin/PTA1 N-terminal	Repeat	Interproscan
PF12295 all species →	Symplekin_C	Symplekin tight junction protein C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR032460 all species →	Domain	Symplekin/Pta1, N-terminal	Interproscan
IPR022075 all species →	Domain	Symplekin C-terminal	Interproscan
IPR021850 all species →	Family	Symplekin/Pta1	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15245 all species →	SYMPLEKIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06100	SYMPK; symplekin	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.