Gene detail

Detailed information of evm.model.Ap13.2585 in Astrangia poculata

Genomic Location: Ap13:27456381...27469314
NR annotation: XP_020619983.1, glycogen phosphorylase, muscle form-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

evm.model.Ap13.2585

CAGGTTGGACTAAATGGAGGAATTGGGGAAATAGAAGAAGATGTGGCCTTAGGGGGTCTTGGAGATTGGCAGCATGTTTCCCTGGACTCACTAGCCACCTTAGGTTCGCTGCATATGGCTAGGCATCAGATATGAATGGAATATTTAAACAGGGTATTTTTAGCCAGGGAAACAGACCGAGTTGCCCGATGACTGGCTCAAGTTTGGAAACCCCTGGGAGAAAGCCAGACCAGAGTACATGATTCCTGTTCAGTTTTATGGAAAAGTGGAGTCAGATGTTAGTGGAAAGAGTCATCGCTGGGTTGATGCAAGCACAGTGTATGCTATGCCGTATGATCAGCCCATTCCTGGCTATGGCAATAATACATGTAACACCATGAGACTGTGGGCGGCCAAGTCTCCAAAGGGTTTTGATCTCTCTTATTTTAATGACGGAGATTACATAAAAGCAGTCCTGGACAGAAATGTGGCAGAGAACATTTCAAGAGTTTTATACCCAAATGACAATTTTTTTGAAGGAAAAGAGTTACGTTTGAAACAGCAGTACTTCATGGTTTGTGCAACTCTTACTGACATTGTTAGAAGATTCAAAGCTCCCAAATTTGGCTCCAAGGAAGCGATAAGGACTACCTTTGATAACTTTCCCGACAAAGTCGCCATTCAGTTGAACGACACTCATCCATCTCTAGCTATTCCAGAACTCATGAGGGTATTTGTGGATGTCGAGAAACTCAGTTGGGACAAGGCTTGGGACATCTGTGTGAGGACATTTAGCTACACCAATCACACCGTTCTTCCAGAGGCACTGGAGAGGTGGCCAGTGCACATGCTGGAGTACATTCTACCACGACATCTTCAGATTATCTACGAAATCAATGCTTTGTTCCTAAAGAAAGTATCAGAAAAATTTCCAGGAGACATGGACAGAATGCGACGGATGTCCATGGTGGAAGAAGGACCTGAAAAGCGCATCAACATGTCGCACTTGTGTATTGTTGGCTCTCATGCAATCAATGGAGTGGCTGCTCTGCATTCTGAACTTCTTAAAACAACAGTATTTAAAGACTTCTACGAAATGTTTCCTGAGAAGTTCCAGAACAAGACTAATGGTGTGACTCCCCGTCGCTGGCTTCTTCTCTGCAACCCTGGCCTGTCAGACCTCATCTGCGAGAAAATTGGTGAAGGATGGATAACAGATTTGTCACAGCTGAGAAAGCTGGAGAAGTATGTCAATGACAAGAACTTCAAGCATGCTTTCATGAGAAGCAAACAGGAAAACAAGATTAGACTTGCAGACTACATCAAGAAAGAGTACGATATTACTGTCAATGTGAACTCTATTTTTGATGTCCAAGTGAAGCGAATCCATGAGTACAAAAGACAGCTGATGAACTGCCTTCATGTCATTATTCTGTACAACCGACTTAAAGCAAATCCAAACATGGATTTTGTTCCACGTACTGTCATGCTTGGAGGAAAGGCAGCTCCTGGCTACTACATGGCCAAACTAATCATTAAACTTTTCAACAGCATTGCCAGAGTGGTAAACAATGATCCAATCGTTGGAGATAAACTTAAACTTGTGTTTCTTGAAAACTACAGAGTCTCTCTTGCTGAAAAGGTTATCCCAGCTTCTGACCTGTCTGAGCAGATATCTTTGGCAGGAACTGAAGCCTCTGGAACAGGAAACATGAAATTCATGATGAATGGAGCTTTGACCATCGGCACTCTGGATGGAGCCAATGTTGAAATGAAGGAAGAGATGGGAGATGAGAACATCTTTATCTTTGGCATGACCGTGGAGGAAGTTAGTGCAATACGAGCCAAAGGCTACAAGCCAATGGATTACTATGACAATAATCAAGAACTGAGGAAAGCCATCAACCAGATCAGAGACAATTACTTCTCGCCAACTGAGCCTGGTACATTTCAGGACATTGTCAATTCTCTGCTGCACCATGACAGGTTCCTTCTGATGGCCGATTTCGACGCCTACCTCAAGTGCCAAGAACGAGTCAGTGATACGTTCCAGGACCCAGAAGAATGGTACACCATGGCAATCTTGAATGTGGCATCCTCTGGCAAGTTCTCAAGTGACAGGACCATCCAGCAGTATGCAGATGACATCTGGAAAGTTAAACCTTTGAGTATGAATGACGTGAAGACCGTCAGCGGCAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00489	Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus OX=9986 GN=PYGM PE=1 SV=3
Q9WUB3	Glycogen phosphorylase, muscle form OS=Mus musculus OX=10090 GN=Pygm PE=1 SV=3
P79334	Glycogen phosphorylase, muscle form OS=Bos taurus OX=9913 GN=PYGM PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004543 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00343 all species →	Phosphorylase	Carbohydrate phosphorylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000811 all species →	Family	Glycosyl transferase, family 35	Interproscan
IPR035090 all species →	Conserved_site	Phosphorylase pyridoxal-phosphate attachment site	Interproscan
IPR011833 all species →	Family	Glycogen/starch/alpha-glucan phosphorylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11468 all species →	GLYCOGEN PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008184 all species →	Molecular Function	glycogen phosphorylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00688	PYG, glgP; glycogen phosphorylase	EC:2.4.1.1	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.