Gene detail

Detailed information of evm.model.Ap13.2599_evm.model.Ap13.2590 in Astrangia poculata

Genomic Location: Ap13:27497099...27566239
NR annotation: KAJ7365571.1, hypothetical protein OS493_005686 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2599_evm.model.Ap13.2590

atgtcgccaaaaactaaagaaattcaaaagatagctgaagcagaaaaagaagataaaggaaagaaagaaaagaggctgaaatcaaaagatgcagagaaaggaacagactcttcaaaatccagtgcacaggaacccctaaccttgccagaaagaaaaggaggaccgcaccaaaagctgctgattaaacctggtgggctgtggtatgaattggttgttaaagagaaagccacctacccattagacagcagtcaaactgatattgtccagctttctaaagaagcagcagatcttttggagaatgaagttagcatctatgacaaaatgaaagcaaaagaaaagtcatcagattcacagtggttgaaatctgttgtaagttcaggaacattgaacgacaaagtagctgctcttactgttcaagtacaggagtctgctgtacatcggctgaaaactttggacatgttacttggcatggctaaaaagaagggacgaagagagagcattatagctgttgatatgttgaaagaactttggatgacattgttgctgccaaatgatcataagctgagaaaatttgcccagcatcccctaacatcgttagtggaagttgtccacaaaggaggtggctgggatgaacgtgacaggagacttattctgtggcattttgaggagttgctaaaacaaagatacaaggagtttattgaagttttggagaaacttcttcaagatactttggtaaacatcagaagcaaaatgctaggaacaatatttgatttgttgtcggagaaaccagagcaagagcaagttttgttgagtctgcttgtaaacaagataggagatcctgacagaaaagtggcatcaaaagctgtttatctgacaaggagtttagtcactaagcatccaaacatgaagcttgtggtcacaaaggagattgagaagcttctctacagacccaacattgccctcaaggctcaatattttgctgtttgttttcttaatcagctgatcctcactaaacaagacagcgaacttgccaccagactaatttctatctacttttccttctttggtgcattcttaaaaaaaggagacatggaagcaaaaatgttgagtgccctcctcacaggagtcaacagagcttttccttttgccaaagaggacgatgagcagtacaatgaacaaataaacacactatttcgtacagtacatattggaacctttaatacaagtgtacaggctcttatgcttctgtttcaagtcatggaatcaaggcagtctgtgtcagatcgattttatcaggcgctttacgccaaactgcttgacccgagcttaaaaacctccacgaaacaggctgtattcctgaacgttttgtacaagtctttaaaaagtgacccttcgcttcaccgtgttaaggcgtttgttaaacgcatcttacaagtttgcagttttcagcagccggcgttcatctgtggaacactattcatgatttccgagctgacaaaactaaaaccaggaatcaagagtctaacacagcagccagaggaggaagacgacgaagaacatttcgtcgacatgccatcggacgaagaaaacgacaacacggggactcagggcggttcatcccgtggagatgaagctcacacacgccatgttgacacacctaaggacccaacggctggagccaacctcgggggtgctcagaaaagccaaacctacaagccccatcaaagaaatcctttgtacagcggggcagaaaacgcgtgtttatgggaacttaacaagctctccaggcattaccatccgtcggtgtgcctatttgctcgtactcttatgaagggtgatgacattgaatacaagggagaccctttacaagactttactcttatgagatttctggacagatttgtatacaaaaatccgaagcaaaaagagcgagatcacggaggttcactgatgcagccgaaaacgtcatcaagcaggctggccgaggagcctgtgaatactaaagcattccttgtgaagaaagaagaggacattcgagaagatgaacttttctttcataggtattttaaacagaaggaagaaaaagaaagtaaacggaaaaagaaaaatagggattctgatggtgacacttcagaaaacgcagcgaatttcgacaacattaaagacgagcgctccagtgtggaattcgacttcgcaagcgtgttgaagagctcaaaaaagcctggtgaacgtaaaaataaaaccgccgctagtgacgaggaggacgaaggtgacgatgcagaacaaagcgaggaggagagtgatagtaaagacgaagacttggcggagaaagagcaagatttatcggaggatgagtttgattatgaggcgatgggtttttcatctagtgaggaagaagacacggaggaaacagttaattcacaaggcaagaaaagaaaaccgacagaaaaagattacgagaaggctttgctcgaaaacctgagctctgatgaattttccgaagacgaaggaagcccgagtaagaaaaagaaatcccagaaaggacattttgaaggaggtaacgatgtatcatcgatgtttgcttccgctgaagaattcgctcatctgttagagaactccaaggcttcacgtggtggaagttatgacgtcaagagggagggcgccagcgacaagcaactgagttgggaagagaaaaaggcgggaaaaaactggaatcaaaagagaggagacaggggtcgtggacgaggtggaaggaaaggaccgcccagagaagccaattcaaatccgaggaacaaattcaaatcgcaaggaaggggtgcgaagaggaagagatag

Transcript

evm.model.Ap13.2599_evm.model.Ap13.2590

CCAAACATGTCGCCAAAAACTAAAGAAATTCAAAAGATAGCTGAAGCAGAAAAAGAAGATAAAGGAAAGAAAGAAAAGAGGCTGAAATCAAAAGATGCAGAGAAAGGAACAGACTCTTCAAAATCCAGTGCACAGGAACCCCTAACCTTGCCAGAAAGAAAAGGAGGACCGCACCAAAAGCTGCTGATTAAACCTGGTGGGCTGTGGTATGAATTGGTTGTTAAAGAGAAAGCCACCTACCCATTAGACAGCAGTCAAACTGATATTGTCCAGCTTTCTAAAGAAGCAGCAGATCTTTTGGAGAATGAAGTTAGCATCTATGACAAAATGAAAGCAAAAGAAAAGTCATCAGATTCACAGTGGTTGAAATCTGTTGTAAGTTCAGGAACATTGAACGACAAAGTAGCTGCTCTTACTGTTCAAGTACAGGAGTCTGCTGTACATCGGCTGAAAACTTTGGACATGTTACTTGGCATGGCTAAAAAGAAGGGACGAAGAGAGAGCATTATAGCTGTTGATATGTTGAAAGAACTTTGGATGACATTGTTGCTGCCAAATGATCATAAGCTGAGAAAATTTGCCCAGCATCCCCTAACATCGTTAGTGGAAGTTGTCCACAAAGGAGGTGGCTGGGATGAACGTGACAGGAGACTTATTCTGTGGCATTTTGAGGAGTTGCTAAAACAAAGATACAAGGAGTTTATTGAAGTTTTGGAGAAACTTCTTCAAGATACTTTGGTAAACATCAGAAGCAAAATGCTAGGAACAATATTTGATTTGTTGTCGGAGAAACCAGAGCAAGAGCAAGTTTTGTTGAGTCTGCTTGTAAACAAGATAGGAGATCCTGACAGAAAAGTGGCATCAAAAGCTGTTTATCTGACAAGGAGTTTAGTCACTAAGCATCCAAACATGAAGCTTGTGGTCACAAAGGAGATTGAGAAGCTTCTCTACAGACCCAACATTGCCCTCAAGGCTCAATATTTTGCTGTTTGTTTTCTTAATCAGCTGATCCTCACTAAACAAGACAGCGAACTTGCCACCAGACTAATTTCTATCTACTTTTCCTTCTTTGGTGCATTCTTAAAAAAAGGAGACATGGAAGCAAAAATGTTGAGTGCCCTCCTCACAGGAGTCAACAGAGCTTTTCCTTTTGCCAAAGAGGACGATGAGCAGTACAATGAACAAATAAACACACTATTTCGTACAGTACATATTGGAACCTTTAATACAAGTGTACAGGCTCTTATGCTTCTGTTTCAAGTCATGGAATCAAGGCAGTCTGTGTCAGATCGATTTTATCAGGCGCTTTACGCCAAACTGCTTGACCCGAGCTTAAAAACCTCCACGAAACAGGCTGTATTCCTGAACGTTTTGTACAAGTCTTTAAAAAGTGACCCTTCGCTTCACCGTGTTAAGGCGTTTGTTAAACGCATCTTACAAGTTTGCAGTTTTCAGCAGCCGGCGTTCATCTGTGGAACACTATTCATGATTTCCGAGCTGACAAAACTAAAACCAGGAATCAAGAGTCTAACACAGCAGCCAGAGGAGGAAGACGACGAAGAACATTTCGTCGACATGCCATCGGACGAAGAAAACGACAACACGGGGACTCAGGGCGGTTCATCCCGTGGAGATGAAGCTCACACACGCCATGTTGACACACCTAAGGACCCAACGGCTGGAGCCAACCTCGGGGGTGCTCAGAAAAGCCAAACCTACAAGCCCCATCAAAGAAATCCTTTGTACAGCGGGGCAGAAAACGCGTGTTTATGGGAACTTAACAAGCTCTCCAGGCATTACCATCCGTCGGTGTGCCTATTTGCTCGTACTCTTATGAAGGGTGATGACATTGAATACAAGGGAGACCCTTTACAAGACTTTACTCTTATGAGATTTCTGGACAGATTTGTATACAAAAATCCGAAGCAAAAAGAGCGAGATCACGGAGGTTCACTGATGCAGCCGAAAACGTCATCAAGCAGGCTGGCCGAGGAGCCTGTGAATACTAAAGCATTCCTTGTGAAGAAAGAAGAGGACATTCGAGAAGATGAACTTTTCTTTCATAGGTATTTTAAACAGAAGGAAGAAAAAGAAAGTAAACGGAAAAAGAAAAATAGGGATTCTGATGGTGACACTTCAGAAAACGCAGCGAATTTCGACAACATTAAAGACGAGCGCTCCAGTGTGGAATTCGACTTCGCAAGCGTGTTGAAGAGCTCAAAAAAGCCTGGTGAACGTAAAAATAAAACCGCCGCTAGTGACGAGGAGGACGAAGGTGACGATGCAGAACAAAGCGAGGAGGAGAGTGATAGTAAAGACGAAGACTTGGCGGAGAAAGAGCAAGATTTATCGGAGGATGAGTTTGATTATGAGGCGATGGGTTTTTCATCTAGTGAGGAAGAAGACACGGAGGAAACAGTTAATTCACAAGGCAAGAAAAGAAAACCGACAGAAAAAGATTACGAGAAGGCTTTGCTCGAAAACCTGAGCTCTGATGAATTTTCCGAAGACGAAGGAAGCCCGAGTAAGAAAAAGAAATCCCAGAAAGGACATTTTGAAGGAGGTAACGATGTATCATCGATGTTTGCTTCCGCTGAAGAATTCGCTCATCTGTTAGAGAACTCCAAGGCTTCACGTGGTGGAAGTTATGACGTCAAGAGGGAGGGCGCCAGCGACAAGCAACTGAGTTGGGAAGAGAAAAAGGCGGGAAAAAACTGGAATCAAAAGAGAGGAGACAGGGGTCGTGGACGAGGTGGAAGGAAAGGACCGCCCAGAGAAGCCAATTCAAATCCGAGGAACAAATTCAAATCGCAAGGAAGGGGTGCGAAGAGGAAGAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53569	CCAAT/enhancer-binding protein zeta OS=Mus musculus OX=10090 GN=Cebpz PE=1 SV=2
Q03701	CCAAT/enhancer-binding protein zeta OS=Homo sapiens OX=9606 GN=CEBPZ PE=1 SV=3
O36021	Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4F10.09c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040155 all species →	Family	CEBPZ/Mak21-like	Interproscan
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12048 all species →	CCAAT-BINDING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14832	MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.2599_evm.model.Ap13.2590 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

4TPM > 0

4Conditions

176.9Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	1	5.16	72.25
whole organism · heat control	12	3	28.91	176.91
whole organism · cold challenge	12	0	0.00	0.00
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	72.25
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	176.91
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	107.38
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	62.63
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.