Gene detail

Detailed information of evm.model.Ap13.2704 in Astrangia poculata

Genomic Location: Ap13:28531569...28576738
NR annotation: CAH3160862.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2704

atgagcgaagtcgaaatgagggaaaatccagaattagacttcagtgatcttggaaaaaaatggataagcagactgagagaaatgagggacttccgaagtatgtttacagaacatctttcagaatacgtgtttaaatgttttgaactgcattctgatccgaatctgaaggcttttatcaacgaggagaaatgccagcggacgatttttactccattggagtacttcatttgtggcgaggatccaacgataggttttcaaaaactgcaaagcgcgaattcaccttctcagctgtgtggcaaagtgtttaaggtcggggaaccaacttattcttgcagggactgtggctatgatagtacttgtgttctctgtatagactgttttcaaaagagtatccataaaaatcatcattacaagatgaacacttcagggggtggaggattttgtgattgtggtgacgttgaggcctggaaggacggtgtggcatgcgatacacatcaacacacaggcgatactgacatggatgagaatccaattgctaagctgcctcaggatgttctagaacgaggtgttgatatctacaaagttgttctagattactgcattgatcttatctgctgggacaaaacagatgaacttccagattatttagatgtctcttgtaatgaggacacttttgctacagtgttatttaatgatgaagttcatacctatgaggaggtgatccgtacattacagcaagcaatacccagatgctcacaaagccaggctatagcttacgctaatattgtggacagggagggcaggtccattgtgaggacaggaagttacagtgaatgtgagcactccagaagattgataaaggttaaccaactgcctcatgaatatgaaggatgggttccttgggatatccagggggctccactgtggtcaggcagccccccacaaggtacatcaggacctagtcataaaccgctgaagtgccgtgtgatgcatcataaagtcatcgctcatcaaatatgtgccgttcagatgctgggctggttgaacaagatcacaaattattctgatggcctcagacgaatactctgtaatactgtccttgtacccaaagatggttatgatcttcttagcagagtgctcctgtctgactcaacattgtggaaagttgccagagctcatacccacaagttgttcatgaacacaatgttaatggatcctgtgggaaagaaagcatttgctattcattttacaaagcattacagtcaaattcaaaaggactttgttgaggacgatcacgaacacagtgtttcagtgacatctctgtcagttcaactttacactgtccccacaatagctaaaatgttaatattagaacatgatgtattggaagtgattcttttggcgtatatggagcaactgaacccttttctgaatgatcagggaaccttcgaatttcagaagcagtccttaaaacttagaagagctcatttcatgatgatagacctcaagtatattctactgcacaagcccacagaatggacagaggaactgcgaggaaaattcattaagtttttggacaagttttttggattacttaagtgtatgcatggaatggatatggtaacccgtaaaacaggtcggcatatcgagacagagccagactatgaaggagcattcactttacaaatcagaatgatgccagtctacacgctagtttatgattggtgctttagtgatgtgctgatcttcaggacagccatccttgaatcaatcaaaacacttcttgaagcgagaaagaaacaagaggaagttgtcatgaaaaatgtgcaagtgtctggttgttctctgaggttgtttcggtatgacgtctcatctgcacccgtttctgttcatttaccggtctcaagatttctcgcaggtcttctccttttctgtgataagtttcaactgtcattttgggacctatttggatttgaaactcaggatgacaggctgaagctgtttctgatggagtacccactccgcactctgactatggtggcacaagtacaggctggaatgtggcgaaggaatggttactttgttattaatcaggtgtttaattatttaaatgtgagatgccgggcagatatgtttgacaaggacgtactaatgcttcaggttgtggcatctttcttggagagtgattacttcgtgctagccatgctggacaagtttgatctagtggattggtctaagcatgactttgacgacagcaaatatgaccaggagaaactaacccaaaaactgacgattgccgaatcattcttttccttgcttatagccattgtcggtgagaggtatatgcctggtgtcggccgtgtgtcagcggatgatttcatgagacgtgagattgtccacaggttgtgcctccgccccatgacccatagcgagcttatcaaggctcttcctctgctcgacaatgagttggaggacgaggaaggcgtggatggaatcattgaatctgtgtcaacctttaaaaaaccgggcgttaccgggcggggattgtatgaactcaaagaagagtacctcaaggaatataatccgttcttctatcactacacacggattgaacaatctaaggctgaggaacagcaaagaaagagaacgaaaaaggagagcgaagtcaaaggcgttcccccacccatccctcctgagttttgttcaccgttcagtaaagtgttgaatgtgttgtgctgtaagacgcttgttggtctcatgaacgcgctgctcagaagagcaaatactgcatcacccagggctgttacagatctgctgctacaacaggttcttcatctaatttgtcttgcccttcacgaggaaaaaagacacagaatgaatgaaaagacttcggaatttaactttctctgcatggcaacgtcaaaacaagattatccccaaagtcttcttgtgtcgctggagagtcttcatgggagccagatgatcgaggaacattcgggacagcttgactggattattaagactttccacgaggagcttgaagcccgtgaacagaagccccaggggagtggtactgtgcagcgggctaccttggagaggagcacttcacaagaggaagagaaagcaagaaaagccaaacttgctcaggagaggagagccaagatcatggcacagatgtccgccttgcaaaaagctttcatcaaagaaaatgctgaattactggcatcaatggagactgaaggccctaacacagtggagccgagtgttgcggagggcagcggtgatacttcacaagaagagcctgtagtacttggtgtccagcggtgccagaaagaaatgcgaactccacgctatgcaaccgagccttgtattttgtgtcaagaacaacaggaggtcagcagtgatggacgcgccatcgttatggcctctttcgtccagcggtcgaccgtgttgtcccgttcccgcgggaagatgttcgaaaacggtgacgggctggacccgctatacaccccaggggaccagtactggggagttcacgtcagcagctgtggtcacatgatgcatagcgactgttggcagggattctacacgtctgttgtagtaaaggaacggagagctttgcgtctgggccagcattttagtgttgatgtcacgagaagagagtatctgtgcccattgtgtggctgtatcagcaactcagttctgccaatgatgcctgcgctgtttaacggacggggagagggtatcgaggaggtaacgattccagaatttttaagcagtatgcaggacttggtgtcgtcaaatctcagcttgttttccgaggaagatgaaaagaaagggaagaaagtcgcatctccagtccccgaaaggtttcaagcagtatttcaaactcttcttaaaactggaacaaagttttctgacgatctgaaagaaatgatgaaggttttttcgcagtcgtgtttcacggttggcttgggggttgaccctaatgaagacgacaaacgcgttcccgtaatggtgttggaagcttgtacttacaccatacaaagcggagatagtgctttaagaacggaaagtaagcctcttttctcaggactcacaactcgtcagtctcagtgtatggctgccttaactcgtcaagctgctgttgtgtcgggaatatttcccagcaaagctattcaacgccactgccttcgtcttctgtctgtcctaacccctgacgcggttcctggtggtgacggcccctccctcctggagttggatttgttcagcttgatggtaaagctccgcctggtgctaccgagcatgttatatcaggagtctggtgacgggggcacgtcacctgtgttgaagagcattatgggtttgaattccccggtcacaattgatcaaagtgtgtttcagctcacattgatggcgcgtgttgtacagatacttctcaccacttcttctgatctcccaagtgctgaaaacgaagatgaatcaatggaccaggaagcgcctcgtttggacgaggctgctaggctggctgcgttgtggggtaaactgaggcactgggccggttcccagtccactactccacaccccatgccagtggaacttctgggtcacgtgaaaacacagttgttaccattcctccgctgttcagctttgttcttccattttctgaccgagattccaggaccagaactcttgaaagaccccaaccggcctttgcttaccgaggagctggagagcttgagccgatacctttcagtgcctgcagacatgacgtgtttattgcagtggaaccaagaaagtacttctatcagttcatctactatctccacaactatcaaaaggtggtgtggtcacgagcatgtcaagaaaaccttggctactgcaggagttgaacctcttgggtattctattgaacccaatcatttgctgaggattcctgtggactacagtgagcttatcaacgaggcgtcaatgttcacgtgcccaaattctgatggtgatgatagccgtgcgcctgcgctctgtctgatctgcggcgaaatgctctgctctcaaagttactgctgtcaaacagtagttgaaggagacaagatcggcgcctgtgctgcgcatgcccagaagtgtggtgcaggggttggtgtgtttctacgcgtgcgtgaatgtcagatcctgttgatgaccaacaagaacaaaggatgtttttattctcctccgtatttagatgcatatggcgaaactgaccagggactcaggcggggtaatcccctctacctttgcccagatcgataccggaagctggagaaactttggttgactcactcagtggccgaggaggtcgcgcattgcctggaatctaatagaaacttgttatcaattgactggacaaacctgtaa

Transcript

evm.model.Ap13.2704

ATGAGCGAAGTCGAAATGAGGGAAAATCCAGAATTAGACTTCAGTGATCTTGGAAAAAAATGGATAAGCAGACTGAGAGAAATGAGGGACTTCCGAAGTATGTTTACAGAACATCTTTCAGAATACGTGTTTAAATGTTTTGAACTGCATTCTGATCCGAATCTGAAGGCTTTTATCAACGAGGAGAAATGCCAGCGGACGATTTTTACTCCATTGGAGTACTTCATTTGTGGCGAGGATCCAACGATAGGTTTTCAAAAACTGCAAAGCGCGAATTCACCTTCTCAGCTGTGTGGCAAAGTGTTTAAGGTCGGGGAACCAACTTATTCTTGCAGGGACTGTGGCTATGATAGTACTTGTGTTCTCTGTATAGACTGTTTTCAAAAGAGTATCCATAAAAATCATCATTACAAGATGAACACTTCAGGGGGTGGAGGATTTTGTGATTGTGGTGACGTTGAGGCCTGGAAGGACGGTGTGGCATGCGATACACATCAACACACAGGCGATACTGACATGGATGAGAATCCAATTGCTAAGCTGCCTCAGGATGTTCTAGAACGAGGTGTTGATATCTACAAAGTTGTTCTAGATTACTGCATTGATCTTATCTGCTGGGACAAAACAGATGAACTTCCAGATTATTTAGATGTCTCTTGTAATGAGGACACTTTTGCTACAGTGTTATTTAATGATGAAGTTCATACCTATGAGGAGGTGATCCGTACATTACAGCAAGCAATACCCAGATGCTCACAAAGCCAGGCTATAGCTTACGCTAATATTGTGGACAGGGAGGGCAGGTCCATTGTGAGGACAGGAAGTTACAGTGAATGTGAGCACTCCAGAAGATTGATAAAGGTTAACCAACTGCCTCATGAATATGAAGGATGGGTTCCTTGGGATATCCAGGGGGCTCCACTGTGGTCAGGCAGCCCCCCACAAGGTACATCAGGACCTAGTCATAAACCGCTGAAGTGCCGTGTGATGCATCATAAAGTCATCGCTCATCAAATATGTGCCGTTCAGATGCTGGGCTGGTTGAACAAGATCACAAATTATTCTGATGGCCTCAGACGAATACTCTGTAATACTGTCCTTGTACCCAAAGATGGTTATGATCTTCTTAGCAGAGTGCTCCTGTCTGACTCAACATTGTGGAAAGTTGCCAGAGCTCATACCCACAAGTTGTTCATGAACACAATGTTAATGGATCCTGTGGGAAAGAAAGCATTTGCTATTCATTTTACAAAGCATTACAGTCAAATTCAAAAGGACTTTGTTGAGGACGATCACGAACACAGTGTTTCAGTGACATCTCTGTCAGTTCAACTTTACACTGTCCCCACAATAGCTAAAATGTTAATATTAGAACATGATGTATTGGAAGTGATTCTTTTGGCGTATATGGAGCAACTGAACCCTTTTCTGAATGATCAGGGAACCTTCGAATTTCAGAAGCAGTCCTTAAAACTTAGAAGAGCTCATTTCATGATGATAGACCTCAAGTATATTCTACTGCACAAGCCCACAGAATGGACAGAGGAACTGCGAGGAAAATTCATTAAGTTTTTGGACAAGTTTTTTGGATTACTTAAGTGTATGCATGGAATGGATATGGTAACCCGTAAAACAGGTCGGCATATCGAGACAGAGCCAGACTATGAAGGAGCATTCACTTTACAAATCAGAATGATGCCAGTCTACACGCTAGTTTATGATTGGTGCTTTAGTGATGTGCTGATCTTCAGGACAGCCATCCTTGAATCAATCAAAACACTTCTTGAAGCGAGAAAGAAACAAGAGGAAGTTGTCATGAAAAATGTGCAAGTGTCTGGTTGTTCTCTGAGGTTGTTTCGGTATGACGTCTCATCTGCACCCGTTTCTGTTCATTTACCGGTCTCAAGATTTCTCGCAGGTCTTCTCCTTTTCTGTGATAAGTTTCAACTGTCATTTTGGGACCTATTTGGATTTGAAACTCAGGATGACAGGCTGAAGCTGTTTCTGATGGAGTACCCACTCCGCACTCTGACTATGGTGGCACAAGTACAGGCTGGAATGTGGCGAAGGAATGGTTACTTTGTTATTAATCAGGTGTTTAATTATTTAAATGTGAGATGCCGGGCAGATATGTTTGACAAGGACGTACTAATGCTTCAGGTTGTGGCATCTTTCTTGGAGAGTGATTACTTCGTGCTAGCCATGCTGGACAAGTTTGATCTAGTGGATTGGTCTAAGCATGACTTTGACGACAGCAAATATGACCAGGAGAAACTAACCCAAAAACTGACGATTGCCGAATCATTCTTTTCCTTGCTTATAGCCATTGTCGGTGAGAGGTATATGCCTGGTGTCGGCCGTGTGTCAGCGGATGATTTCATGAGACGTGAGATTGTCCACAGGTTGTGCCTCCGCCCCATGACCCATAGCGAGCTTATCAAGGCTCTTCCTCTGCTCGACAATGAGTTGGAGGACGAGGAAGGCGTGGATGGAATCATTGAATCTGTGTCAACCTTTAAAAAACCGGGCGTTACCGGGCGGGGATTGTATGAACTCAAAGAAGAGTACCTCAAGGAATATAATCCGTTCTTCTATCACTACACACGGATTGAACAATCTAAGGCTGAGGAACAGCAAAGAAAGAGAACGAAAAAGGAGAGCGAAGTCAAAGGCGTTCCCCCACCCATCCCTCCTGAGTTTTGTTCACCGTTCAGTAAAGTGTTGAATGTGTTGTGCTGTAAGACGCTTGTTGGTCTCATGAACGCGCTGCTCAGAAGAGCAAATACTGCATCACCCAGGGCTGTTACAGATCTGCTGCTACAACAGGTTCTTCATCTAATTTGTCTTGCCCTTCACGAGGAAAAAAGACACAGAATGAATGAAAAGACTTCGGAATTTAACTTTCTCTGCATGGCAACGTCAAAACAAGATTATCCCCAAAGTCTTCTTGTGTCGCTGGAGAGTCTTCATGGGAGCCAGATGATCGAGGAACATTCGGGACAGCTTGACTGGATTATTAAGACTTTCCACGAGGAGCTTGAAGCCCGTGAACAGAAGCCCCAGGGGAGTGGTACTGTGCAGCGGGCTACCTTGGAGAGGAGCACTTCACAAGAGGAAGAGAAAGCAAGAAAAGCCAAACTTGCTCAGGAGAGGAGAGCCAAGATCATGGCACAGATGTCCGCCTTGCAAAAAGCTTTCATCAAAGAAAATGCTGAATTACTGGCATCAATGGAGACTGAAGGCCCTAACACAGTGGAGCCGAGTGTTGCGGAGGGCAGCGGTGATACTTCACAAGAAGAGCCTGTAGTACTTGGTGTCCAGCGGTGCCAGAAAGAAATGCGAACTCCACGCTATGCAACCGAGCCTTGTATTTTGTGTCAAGAACAACAGGAGGTCAGCAGTGATGGACGCGCCATCGTTATGGCCTCTTTCGTCCAGCGGTCGACCGTGTTGTCCCGTTCCCGCGGGAAGATGTTCGAAAACGGTGACGGGCTGGACCCGCTATACACCCCAGGGGACCAGTACTGGGGAGTTCACGTCAGCAGCTGTGGTCACATGATGCATAGCGACTGTTGGCAGGGATTCTACACGTCTGTTGTAGTAAAGGAACGGAGAGCTTTGCGTCTGGGCCAGCATTTTAGTGTTGATGTCACGAGAAGAGAGTATCTGTGCCCATTGTGTGGCTGTATCAGCAACTCAGTTCTGCCAATGATGCCTGCGCTGTTTAACGGACGGGGAGAGGGTATCGAGGAGGTAACGATTCCAGAATTTTTAAGCAGTATGCAGGACTTGGTGTCGTCAAATCTCAGCTTGTTTTCCGAGGAAGATGAAAAGAAAGGGAAGAAAGTCGCATCTCCAGTCCCCGAAAGGTTTCAAGCAGTATTTCAAACTCTTCTTAAAACTGGAACAAAGTTTTCTGACGATCTGAAAGAAATGATGAAGGTTTTTTCGCAGTCGTGTTTCACGGTTGGCTTGGGGGTTGACCCTAATGAAGACGACAAACGCGTTCCCGTAATGGTGTTGGAAGCTTGTACTTACACCATACAAAGCGGAGATAGTGCTTTAAGAACGGAAAGTAAGCCTCTTTTCTCAGGACTCACAACTCGTCAGTCTCAGTGTATGGCTGCCTTAACTCGTCAAGCTGCTGTTGTGTCGGGAATATTTCCCAGCAAAGCTATTCAACGCCACTGCCTTCGTCTTCTGTCTGTCCTAACCCCTGACGCGGTTCCTGGTGGTGACGGCCCCTCCCTCCTGGAGTTGGATTTGTTCAGCTTGATGGTAAAGCTCCGCCTGGTGCTACCGAGCATGTTATATCAGGAGTCTGGTGACGGGGGCACGTCACCTGTGTTGAAGAGCATTATGGGTTTGAATTCCCCGGTCACAATTGATCAAAGTGTGTTTCAGCTCACATTGATGGCGCGTGTTGTACAGATACTTCTCACCACTTCTTCTGATCTCCCAAGTGCTGAAAACGAAGATGAATCAATGGACCAGGAAGCGCCTCGTTTGGACGAGGCTGCTAGGCTGGCTGCGTTGTGGGGTAAACTGAGGCACTGGGCCGGTTCCCAGTCCACTACTCCACACCCCATGCCAGTGGAACTTCTGGGTCACGTGAAAACACAGTTGTTACCATTCCTCCGCTGTTCAGCTTTGTTCTTCCATTTTCTGACCGAGATTCCAGGACCAGAACTCTTGAAAGACCCCAACCGGCCTTTGCTTACCGAGGAGCTGGAGAGCTTGAGCCGATACCTTTCAGTGCCTGCAGACATGACGTGTTTATTGCAGTGGAACCAAGAAAGTACTTCTATCAGTTCATCTACTATCTCCACAACTATCAAAAGGTGGTGTGGTCACGAGCATGTCAAGAAAACCTTGGCTACTGCAGGAGTTGAACCTCTTGGGTATTCTATTGAACCCAATCATTTGCTGAGGATTCCTGTGGACTACAGTGAGCTTATCAACGAGGCGTCAATGTTCACGTGCCCAAATTCTGATGGTGATGATAGCCGTGCGCCTGCGCTCTGTCTGATCTGCGGCGAAATGCTCTGCTCTCAAAGTTACTGCTGTCAAACAGTAGTTGAAGGAGACAAGATCGGCGCCTGTGCTGCGCATGCCCAGAAGTGTGGTGCAGGGGTTGGTGTGTTTCTACGCGTGCGTGAATGTCAGATCCTGTTGATGACCAACAAGAACAAAGGATGTTTTTATTCTCCTCCGTATTTAGATGCATATGGCGAAACTGACCAGGGACTCAGGCGGGGTAATCCCCTCTACCTTTGCCCAGATCGATACCGGAAGCTGGAGAAACTTTGGTTGACTCACTCAGTGGCCGAGGAGGTCGCGCATTGCCTGGAATCTAATAGAAACTTGTTATCAATTGACTGGACAAACCTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWV8	E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
Q6WKZ8	E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
Q8IWV7	E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens OX=9606 GN=UBR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003166 (this species only)
Ubiquitin family	E3\|E3 activity\|N-domain · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18995 all species →	PRT6_C	Proteolysis_6 C-terminal	Domain	Interproscan
PF02617 all species →	ClpS	ATP-dependent Clp protease adaptor protein ClpS	Family	Interproscan
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR044046 all species →	Domain	E3 ubiquitin-protein ligase UBR-like, C-terminal	Interproscan
IPR003769 all species →	Domain	Adaptor protein ClpS, core	Interproscan
IPR039164 all species →	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR042065 all species →	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497 all species →	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10626	UBR2; E3 ubiquitin-protein ligase UBR2	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.