Detailed information of evm.model.Ap13.2716 in Astrangia poculata

Genomic Location: Ap13:28666011...28674128
NR annotation: XP_020623672.1, inactive rhomboid protein 1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q499S9Inactive rhomboid protein 1 OS=Rattus norvegicus OX=10116 GN=Rhbdf1 PE=2 SV=1
Q6PIX5Inactive rhomboid protein 1 OS=Mus musculus OX=10090 GN=Rhbdf1 PE=1 SV=2
B0VX73Inactive rhomboid protein 1 OS=Callithrix jacchus OX=9483 GN=RHBDF1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001895 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01694
all species →
RhomboidRhomboid familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035952
all species →
Homologous_superfamilyRhomboid-like superfamilyInterproscan
IPR051512
all species →
FamilyInactive RhomboidInterproscan
IPR022764
all species →
DomainPeptidase S54, rhomboid domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45965
all species →
INACTIVE RHOMBOID PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005789
all species →
Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0042058
all species →
Biological Processregulation of epidermal growth factor receptor signaling pathwayInterproscan
GO:0050708
all species →
Biological Processregulation of protein secretionInterproscan
GO:0004252
all species →
Molecular Functionserine-type endopeptidase activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.2716.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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