Gene detail

Detailed information of evm.model.Ap13.2728 in Astrangia poculata

Genomic Location: Ap13:28779789...28793684
NR annotation: XP_020623396.1, protein jagged-1b-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2728

atggcctcgggcctgctactgaaaagcttatttttcgaagccttactccaattcattcatctgcagactgccttcggagcgggatcgttcgaaatccatttggtttcaatacaaaacattggaggtgagaaactggatggagactgctgtgatgggagtcgcacaatatatcgaggacaacatcagtgcctggacgagtgcgacacattcttcagagtttgtctcaagcaatactctcaaactgtttcaccgaccggcgcttgtacatttggcgagcacacaactgctgtcttaggaggcagttcgatcacctttacgaacactacatcgccgaatggttttcgcaacccgatttctatacgctttacgttttcatggctgaccacttactacttagttctggaggcttgggatgccgacaactcaagcaacagtgaactgattgaccgagcaactcaacgtggtacgatacttcctaacaagacctgggagactcatacatacaatggccctgcagcaactatcaattatagactcagagtgatctgtgatgagaactactatggcaagagttgcacaaaacattgccaaccccgaaatgacacatttggtcattacacctgtgatgaaaatgggaataaagtttgcatgcctggctggagaggggttcgctgtgatacagctatttgtaaaaccggttgcgacccagttcatggaacttgcagtgttcctggagaatgctcgtgtagtcctcagtctggctggggaggtgaactttgtgatcagtgccaattatatcctggctgtgttcatggaacctgtagccaaccgtggcagtgcaactgtcagcctcagtggggaggattactttgtgatgcagatctcaacaaatgcagagataaaccctgtcgaaatggtggtgtatgttacaacactggagccggttcatacagatgtgactgtcaagatggatatactggagttgactgtgaaacagcaattaacttctgtgcgtcatcaccctgcaaaaacaatggaacctgcaacaatgatgccaatgacttccgttgtacttgtcctcctggatgggcggggcccacttgtgaaacaaatagggactgtcagactcaaccctgccaaaatggaggcacttgtagcaacagtggctcaggatatcaatgtcagtgtcctccaggatggacaggacacatgtgtgaacaggacattgacgagtgtgcgtcaagtccttgttccaattctctcaaatgtattgacctgataaatgcctatgcatgtgaatgcaaagctggatggaaaggaagccactgtaatgagagtatcaatgactgcgctggtcaatgcagaaatggtggaacttgtgtagacttgctgaatgattacaagtgtaattgccccagtggatttacaggcaaaaattgcgagaccaacattgacgactgtcaaaccaatccctgtgtcaatggaggagtatgtaatgatggagttcaaagttatacttgtgtttgtcagactggattcactggagaaaactgtcaagtggcagtcaatgagtgccaaccatcaccttgtgttcatggaacatgctcagatttgcttaacgactacaaatgcacgtgtaatgctggatatactggaagaaattgttcagtggtggcgacagcaaatgtctgtgacccatacccttgccagcatggagctgcatgtgttaagaattcggatggttcaagtacctgtaactgccctcctggatacacaggggcgttctgtgaaaccgacgtcaacgagtgcttgactgcgacatgtaataatgctggaacatgcgtggatgctgtcaatggattcaaatgtgtttgcccagcaggtttttcaggatcaacatgccagattagcatgagctcatgtttaagctcaccttgtcacagctcagcgacatgtgttgataaagtcgatggttatgaatgtgtatgtgctgcaggatacactggggtgaattgtgattacgacgtgaatgattgcggcagattgaatccttgtcggaatggaggaacatgtatggacaggctcaatggataccagtgtcagtgcaggccagagtttactggagccgagtgtgaactcccagtcaatacatgcaccaacagttcttgcgccaacaatggtacatgtatccaaggttctggaatgttcacctgtagctgccttcctggcttttctggacagagatgtgaaacgaagatcaatgcatgcgactccaacccctgccacaatggtgcaacatgccacagctttactggtggttatggctgttcttgtccgattggttttactggcccagattgtgcagtgagaattgattattgtgtgaacttcacttgtgataacggtggttcttgtaacaatgccttggtcggagcgtcctgtaactgcatgccaggatttactggacgacactgtgaggtcaatattgatgaatgtctgtctggtccgtgccataatggaggtcgctgtgtggacaagaataatagttttcattgtgtgtgtccttcaggaacaaggggaagcttttgcgaacaagtgattgatccttgcttggagccagtcttagttaatgggtcttcagtgctgcgggattcaggagtgtgtggagcgcatggtacctgtgagtcactatctgcaggaaaatataagtgcaagtgtgacaaggattacacagggaaccactgtcacctaaaaatcgataactgcaagaacaacacctgtaagaatggagcaagctgtcttgatggaattgaatcatatacatgtgtgtgtactgatggctgggatggaaaattctgcgagcaagatattaatgagtgcagctccaatccatgtcgaaatggcgggaattgtacggacctaatcaatggttttatttgcaagtgcccaaaaccatggaaaggaaaactgtgccaatcaatttcgtcgcattgtaatggaaacccttgtcagaatgaaggcaaatgtattgatacaggagacaactttcactgtgattgtcagaacggatttacaggagctatatgtcaaatagcacctaagccctgctcgtccaacccatgccagaatggcggcacatgtttgaattcagcggatggccacagtttttcatgcgtgtgctcagatgtctgggaaggaaacctatgcgagaaaaatgtcgatgactgtgcgtcaaatccatgtcataatggaggttcctgcattgacggagatggctgggttttgtgttcctgtgcgcctggcttcactggaccagtctgtaaaatcaacatcaacgagtgtaactcgtccccgtgtggcgatggtgcaacatgtagagacaaaatcaacggctttgaatgcatctgtcctccaggaaagtttggatcacggtgccaagatgacgaacacgactggaggcactgtcgactgtcaggtggaggcatacttcagcgacacaataccaaaatgcaggaggattgcaatacatgcacgtgcatgaatggcacgcgcacgtgcactaaggtcgtgtgtggtgcgagcaattgctggaatcatacccaggctggcagctgccctactggaggggtctgcgtacctaagaaggcggtagactgccttagtcccccttgtggccggtgggctgagtgtgaaggcggcgcaacgacttctaagcaaagtgactctggaatcgacgaggaattctgccttcccaacagtacaaacttaaatggagactgtgcaaagatccacattgtgttcacccagaataaactccccaagggaacgcttgtggaggaattctgccaccagttacgatatttaccgatgttgaaagacctggcaaggaaaggaaatattcgattgctttgtgaaggccgaggcaaagatggctccacctcaactgtcattgtatcagtggccagtactccacgcacggagatagctggaaaggcagccgaggatatcgccagatacatccgcgccgtgccttctgataaaggccgtgaaataaacatcactctttacaatgtgctgatagctgtggacgaagttacagttgagcgatctgttacactgtcatatcacgaagaagaagctgcaccggactatctcatccctttaattgcgtcacttgttgtgttggctgctattctcttactcatactctgcatcagaggaaaatggcgagaaagacgtcgagcaaacagagaaacacgattagcagcaagaacaacactgaaaaagaaacgaaatacaacgcaggaaaagccattgactactgctagaacttactataaccagacttcaaccgactccacgacgtcctcatcgacgtcaacgtcgacacattcgacggagttaagaaactttgagtacaaccgagcgagtttgctcgactcaacaccttcagtgtgttctacaccgccgcaagtactttccccacccctctcccctaaggaggaaggcgccaaggatgagtggcggagatttcgagtgcagcggaacagtacgcaaatagaaataattgtataa

Transcript

evm.model.Ap13.2728

ATGGCCTCGGGCCTGCTACTGAAAAGCTTATTTTTCGAAGCCTTACTCCAATTCATTCATCTGCAGACTGCCTTCGGAGCGGGATCGTTCGAAATCCATTTGGTTTCAATACAAAACATTGGAGGTGAGAAACTGGATGGAGACTGCTGTGATGGGAGTCGCACAATATATCGAGGACAACATCAGTGCCTGGACGAGTGCGACACATTCTTCAGAGTTTGTCTCAAGCAATACTCTCAAACTGTTTCACCGACCGGCGCTTGTACATTTGGCGAGCACACAACTGCTGTCTTAGGAGGCAGTTCGATCACCTTTACGAACACTACATCGCCGAATGGTTTTCGCAACCCGATTTCTATACGCTTTACGTTTTCATGGCTGACCACTTACTACTTAGTTCTGGAGGCTTGGGATGCCGACAACTCAAGCAACAGTGAACTGATTGACCGAGCAACTCAACGTGGTACGATACTTCCTAACAAGACCTGGGAGACTCATACATACAATGGCCCTGCAGCAACTATCAATTATAGACTCAGAGTGATCTGTGATGAGAACTACTATGGCAAGAGTTGCACAAAACATTGCCAACCCCGAAATGACACATTTGGTCATTACACCTGTGATGAAAATGGGAATAAAGTTTGCATGCCTGGCTGGAGAGGGGTTCGCTGTGATACAGCTATTTGTAAAACCGGTTGCGACCCAGTTCATGGAACTTGCAGTGTTCCTGGAGAATGCTCGTGTAGTCCTCAGTCTGGCTGGGGAGGTGAACTTTGTGATCAGTGCCAATTATATCCTGGCTGTGTTCATGGAACCTGTAGCCAACCGTGGCAGTGCAACTGTCAGCCTCAGTGGGGAGGATTACTTTGTGATGCAGATCTCAACAAATGCAGAGATAAACCCTGTCGAAATGGTGGTGTATGTTACAACACTGGAGCCGGTTCATACAGATGTGACTGTCAAGATGGATATACTGGAGTTGACTGTGAAACAGCAATTAACTTCTGTGCGTCATCACCCTGCAAAAACAATGGAACCTGCAACAATGATGCCAATGACTTCCGTTGTACTTGTCCTCCTGGATGGGCGGGGCCCACTTGTGAAACAAATAGGGACTGTCAGACTCAACCCTGCCAAAATGGAGGCACTTGTAGCAACAGTGGCTCAGGATATCAATGTCAGTGTCCTCCAGGATGGACAGGACACATGTGTGAACAGGACATTGACGAGTGTGCGTCAAGTCCTTGTTCCAATTCTCTCAAATGTATTGACCTGATAAATGCCTATGCATGTGAATGCAAAGCTGGATGGAAAGGAAGCCACTGTAATGAGAGTATCAATGACTGCGCTGGTCAATGCAGAAATGGTGGAACTTGTGTAGACTTGCTGAATGATTACAAGTGTAATTGCCCCAGTGGATTTACAGGCAAAAATTGCGAGACCAACATTGACGACTGTCAAACCAATCCCTGTGTCAATGGAGGAGTATGTAATGATGGAGTTCAAAGTTATACTTGTGTTTGTCAGACTGGATTCACTGGAGAAAACTGTCAAGTGGCAGTCAATGAGTGCCAACCATCACCTTGTGTTCATGGAACATGCTCAGATTTGCTTAACGACTACAAATGCACGTGTAATGCTGGATATACTGGAAGAAATTGTTCAGTGGTGGCGACAGCAAATGTCTGTGACCCATACCCTTGCCAGCATGGAGCTGCATGTGTTAAGAATTCGGATGGTTCAAGTACCTGTAACTGCCCTCCTGGATACACAGGGGCGTTCTGTGAAACCGACGTCAACGAGTGCTTGACTGCGACATGTAATAATGCTGGAACATGCGTGGATGCTGTCAATGGATTCAAATGTGTTTGCCCAGCAGGTTTTTCAGGATCAACATGCCAGATTAGCATGAGCTCATGTTTAAGCTCACCTTGTCACAGCTCAGCGACATGTGTTGATAAAGTCGATGGTTATGAATGTGTATGTGCTGCAGGATACACTGGGGTGAATTGTGATTACGACGTGAATGATTGCGGCAGATTGAATCCTTGTCGGAATGGAGGAACATGTATGGACAGGCTCAATGGATACCAGTGTCAGTGCAGGCCAGAGTTTACTGGAGCCGAGTGTGAACTCCCAGTCAATACATGCACCAACAGTTCTTGCGCCAACAATGGTACATGTATCCAAGGTTCTGGAATGTTCACCTGTAGCTGCCTTCCTGGCTTTTCTGGACAGAGATGTGAAACGAAGATCAATGCATGCGACTCCAACCCCTGCCACAATGGTGCAACATGCCACAGCTTTACTGGTGGTTATGGCTGTTCTTGTCCGATTGGTTTTACTGGCCCAGATTGTGCAGTGAGAATTGATTATTGTGTGAACTTCACTTGTGATAACGGTGGTTCTTGTAACAATGCCTTGGTCGGAGCGTCCTGTAACTGCATGCCAGGATTTACTGGACGACACTGTGAGGTCAATATTGATGAATGTCTGTCTGGTCCGTGCCATAATGGAGGTCGCTGTGTGGACAAGAATAATAGTTTTCATTGTGTGTGTCCTTCAGGAACAAGGGGAAGCTTTTGCGAACAAGTGATTGATCCTTGCTTGGAGCCAGTCTTAGTTAATGGGTCTTCAGTGCTGCGGGATTCAGGAGTGTGTGGAGCGCATGGTACCTGTGAGTCACTATCTGCAGGAAAATATAAGTGCAAGTGTGACAAGGATTACACAGGGAACCACTGTCACCTAAAAATCGATAACTGCAAGAACAACACCTGTAAGAATGGAGCAAGCTGTCTTGATGGAATTGAATCATATACATGTGTGTGTACTGATGGCTGGGATGGAAAATTCTGCGAGCAAGATATTAATGAGTGCAGCTCCAATCCATGTCGAAATGGCGGGAATTGTACGGACCTAATCAATGGTTTTATTTGCAAGTGCCCAAAACCATGGAAAGGAAAACTGTGCCAATCAATTTCGTCGCATTGTAATGGAAACCCTTGTCAGAATGAAGGCAAATGTATTGATACAGGAGACAACTTTCACTGTGATTGTCAGAACGGATTTACAGGAGCTATATGTCAAATAGCACCTAAGCCCTGCTCGTCCAACCCATGCCAGAATGGCGGCACATGTTTGAATTCAGCGGATGGCCACAGTTTTTCATGCGTGTGCTCAGATGTCTGGGAAGGAAACCTATGCGAGAAAAATGTCGATGACTGTGCGTCAAATCCATGTCATAATGGAGGTTCCTGCATTGACGGAGATGGCTGGGTTTTGTGTTCCTGTGCGCCTGGCTTCACTGGACCAGTCTGTAAAATCAACATCAACGAGTGTAACTCGTCCCCGTGTGGCGATGGTGCAACATGTAGAGACAAAATCAACGGCTTTGAATGCATCTGTCCTCCAGGAAAGTTTGGATCACGGTGCCAAGATGACGAACACGACTGGAGGCACTGTCGACTGTCAGGTGGAGGCATACTTCAGCGACACAATACCAAAATGCAGGAGGATTGCAATACATGCACGTGCATGAATGGCACGCGCACGTGCACTAAGGTCGTGTGTGGTGCGAGCAATTGCTGGAATCATACCCAGGCTGGCAGCTGCCCTACTGGAGGGGTCTGCGTACCTAAGAAGGCGGTAGACTGCCTTAGTCCCCCTTGTGGCCGGTGGGCTGAGTGTGAAGGCGGCGCAACGACTTCTAAGCAAAGTGACTCTGGAATCGACGAGGAATTCTGCCTTCCCAACAGTACAAACTTAAATGGAGACTGTGCAAAGATCCACATTGTGTTCACCCAGAATAAACTCCCCAAGGGAACGCTTGTGGAGGAATTCTGCCACCAGTTACGATATTTACCGATGTTGAAAGACCTGGCAAGGAAAGGAAATATTCGATTGCTTTGTGAAGGCCGAGGCAAAGATGGCTCCACCTCAACTGTCATTGTATCAGTGGCCAGTACTCCACGCACGGAGATAGCTGGAAAGGCAGCCGAGGATATCGCCAGATACATCCGCGCCGTGCCTTCTGATAAAGGCCGTGAAATAAACATCACTCTTTACAATGTGCTGATAGCTGTGGACGAAGTTACAGTTGAGCGATCTGTTACACTGTCATATCACGAAGAAGAAGCTGCACCGGACTATCTCATCCCTTTAATTGCGTCACTTGTTGTGTTGGCTGCTATTCTCTTACTCATACTCTGCATCAGAGGAAAATGGCGAGAAAGACGTCGAGCAAACAGAGAAACACGATTAGCAGCAAGAACAACACTGAAAAAGAAACGAAATACAACGCAGGAAAAGCCATTGACTACTGCTAGAACTTACTATAACCAGACTTCAACCGACTCCACGACGTCCTCATCGACGTCAACGTCGACACATTCGACGGAGTTAAGAAACTTTGAGTACAACCGAGCGAGTTTGCTCGACTCAACACCTTCAGTGTGTTCTACACCGCCGCAAGTACTTTCCCCACCCCTCTCCCCTAAGGAGGAAGGCGCCAAGGATGAGTGGCGGAGATTTCGAGTGCAGCGGAACAGTACGCAAATAGAAATAATTGTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P78504	Protein jagged-1 OS=Homo sapiens OX=9606 GN=JAG1 PE=1 SV=3
Q9Y219	Protein jagged-2 OS=Homo sapiens OX=9606 GN=JAG2 PE=1 SV=3
Q9QYE5	Protein jagged-2 OS=Mus musculus OX=10090 GN=Jag2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF07657 all species →	MNNL	N terminus of Notch ligand C2-like domain	Domain	Interproscan
PF21700 all species →	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR026219 all species →	Family	Jagged/Serrate protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan
IPR011651 all species →	Domain	Notch ligand, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2728.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.