Genomic Location: Ap13:29070294...29075174
NR annotation: XP_020612135.1, TNF receptor-associated factor 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.2752 |
| Transcript |
| evm.model.Ap13.2752 |
| Protein |
| evm.model.Ap13.2752 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000079 (this species only) |
| Ubiquitin family | UBD|ZnF|ZnF_A20 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01754 all species → | zf-A20 | A20-like zinc finger | Family | Interproscan |
| PF02176 all species → | zf-TRAF | TRAF-type zinc finger | Family | Interproscan |
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002653 all species → | Domain | Zinc finger, A20-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR001293 all species → | Domain | Zinc finger, TRAF-type | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10131 all species → | TNF RECEPTOR ASSOCIATED FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0033209 all species → | Biological Process | tumor necrosis factor-mediated signaling pathway | Interproscan |
| GO:0070534 all species → | Biological Process | protein K63-linked ubiquitination | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
evm.model.Ap13.2752.Transcript abundance of evm.model.Ap13.2752 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
