Detailed information of evm.model.Ap13.2757 in Astrangia poculata

Genomic Location: Ap13:29096292...29103607
NR annotation: XP_020612116.1, zinc finger FYVE domain-containing protein 26-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E1BLZ4Zinc finger FYVE domain-containing protein 26 OS=Bos taurus OX=9913 GN=ZFYVE26 PE=3 SV=1
D4A8G9Zinc finger FYVE domain-containing protein 26 OS=Rattus norvegicus OX=10116 GN=Zfyve26 PE=1 SV=1
Q68DK2Zinc finger FYVE domain-containing protein 26 OS=Homo sapiens OX=9606 GN=ZFYVE26 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003079 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap13.2757. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR028730
all species →		FamilyZinc finger FYVE domain-containing protein 26Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46591
all species →		ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000281
all species →		Biological Processmitotic cytokinesisInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0005765
all species →		Cellular Componentlysosomal membraneInterproscan
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan
GO:0030496
all species →		Cellular ComponentmidbodyInterproscan
GO:0032266
all species →		Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0032465
all species →		Biological Processregulation of cytokinesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.2757.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.2757 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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