Gene detail

Detailed information of evm.model.Ap13.279 in Astrangia poculata

Genomic Location: Ap13:3064368...3068957
NR annotation: XP_020618215.1, 26S proteasome non-ATPase regulatory subunit 8-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RE15	26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii OX=9601 GN=PSMD8 PE=2 SV=2
Q3SYT7	26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMD8 PE=2 SV=3
P48556	26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens OX=9606 GN=PSMD8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10075 all species →	CSN8_PSD8_EIF3K	CSN8/PSMD8/EIF3K family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006746 all species →	Family	26S proteasome non-ATPase regulatory subunit Rpn12	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR033464 all species →	Domain	CSN8/PSMD8/EIF3K	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12387 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005838 all species →	Cellular Component	proteasome regulatory particle	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03031	PSMD8, RPN12; 26S proteasome regulatory subunit N12	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.