Genomic Location: Ap13:29667468...29680242
NR annotation: KAJ7384481.1, Carbohydrate (chondroitin 4) sulfotransferase 13 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.2795 |
| Transcript |
| evm.model.Ap13.2795 |
| Protein |
| evm.model.Ap13.2795 |
| UniProt accession | Description |
|---|---|
| Q9JME2 | Carbohydrate sulfotransferase 11 OS=Mus musculus OX=10090 GN=Chst11 PE=2 SV=1 |
| P69478 | Carbohydrate sulfotransferase 11 OS=Rattus norvegicus OX=10116 GN=Chst11 PE=1 SV=1 |
| Q9NPF2 | Carbohydrate sulfotransferase 11 OS=Homo sapiens OX=9606 GN=CHST11 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000287 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03567 all species → | Sulfotransfer_2 | Sulfotransferase family | Domain | Interproscan |
| PF02176 all species → | zf-TRAF | TRAF-type zinc finger | Family | Interproscan |
| PF21355 all species → | TRAF-mep_MATH | TRAF/meprin, MATH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR005331 all species → | Family | Sulfotransferase | Interproscan |
| IPR008974 all species → | Homologous_superfamily | TRAF-like | Interproscan |
| IPR001293 all species → | Domain | Zinc finger, TRAF-type | Interproscan |
| IPR002083 all species → | Domain | MATH/TRAF domain | Interproscan |
| IPR049342 all species → | Domain | TRAF1-6/MEP1A/B-like, MATH domain | Interproscan |
| IPR018011 all species → | Family | Carbohydrate sulfotransferase 8-10 | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12137 all species → | CARBOHYDRATE SULFOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008146 all species → | Molecular Function | sulfotransferase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016051 all species → | Biological Process | carbohydrate biosynthetic process | Interproscan |
evm.model.Ap13.2795.Transcript abundance of evm.model.Ap13.2795 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
