Gene detail

Detailed information of evm.model.Ap13.2822 in Astrangia poculata

Genomic Location: Ap13:29972955...29978983
NR annotation: RUA07179.1, hypothetical protein DSY43_00385 [Gammaproteobacteria bacterium]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2822

atgattatcgccagattcttacgctatggcgacagggagagaataattcgcgaagctttcaagttgaaagataccgattacaaaatctacgaagacatccctcaagagcttttagatgagaggaaaaagctgcttccagttctgcgcaaagccaaaaaggagggaaaacgcgccttttttagcgacacaattagctttatcgtgattcgatctagtatggtccatacagttcctctgggacccgaggagacatatagtaccaaggcagttgaaaacttttggagttcccaatgggacggcaatctcttttttgcgcatggcaccgaacacgcccgtggagttctagtcttaattaaaaaagatttggaatttgagttgaaacaatcaaagtgtgatatcaatggtcgattcatcctccttgaggcaattatacaggacgtcaaattttatctttgcaatatttactcaccgaataattcaaaggaacaagtcgatttcttcactaacgttaaaaatcttctgcaggagaatatttcggaaacgaatccgcatattattttgggtggcgattttaatatgatttttgatactagtttagactgttttggaggaaacccaaaaattaaagattgtgtaaaaatagttaatgatatcatggttgagaatgatttagtcgatatttggagaattcgtaatgtgggaaaaaaacgatttacctggagaaatagctcttcaaagcttcaaaggcgacttgatttttggcttgtgagcgataatttgcaggatgatgtcaagacatctgaaataggcccttctatcaaaagcgatcattcgtcagtttctcttgttatagatagtgttgcggagcaaaaacatggaccctccttttggaaacttgacaccagccttcttgaggatcccgagtatgtacagatgataaacaccgaatattataattggctgaatgagtttcaagaaatttcagacaaaagggtgttatgggatttaatcaagtataggatacgccaagtctcgattggatacagcaagaaaaaacagaaagaaaggacaactgcttttaagaaattggaagaggatcttaaaaaagccgaagaacgttgtgatcaggatccaacaaaccaaaatattcagaatcgagaagaattaaagcaaaagtatgagtcaatgtacgactacatcacccaaggtgcgatgataagatctcgtgtcaactggtatgagcagggtgagaaaaacaataaatacttcttaaatttggaaaattttaaaaagggaaggagtgtcataagaaaccttaatataaatggaacagatgattttaccacagaccccaaaataataatgaaggaaattcgagagttttattcagacctttattcggaaagggtgtcagatgaggaggctgccgctgcatttttaaacagagccgatataccgaaaataaacgaggacctcaaattatcttgcgaaggtcttttaactgtgaatgagacttacaacgctcttttaacctttgcggataacaaaaccccagggaacgatgggttaccagcagaattttataagcggttctggcccctacttgggaaacagctgactcaatgttttaactattcctttgaatacggtcaactgtcgagttcccaatcacaagctgttatcaccttgatacaaaagaaagacagagacaagcgctttgtgaaaaattggcgacctatatctcttatgaatgtggacgctaaaattgggtctaaatctattgcaaggcgaatctgcaaagtgttacccactattattcactcggatcaatgtgcatatgttaaggacagattgatatcagacgcccttcgcaccatagatgacgttatgtggtacacagaaatcaataaaattcccggctggttagttgctattgattttgaaaaggcttttgactcggtgaatgtggaatttttaattaaggcattagaagcattcaactttggccagacttttatcaaatggataagaaccttttacaatggagcaaaaagctgtgttataaacaatgggttcacttcacactattttgatcttcagcgaggagtacgacaaggggatccactctccccgtacctgtttattgttgttatggaagtactgtcgatatccatacgaaaagatgtggaaataaaaggattagtggtagacgagaaagaaattaagctcactagctttgcggatgatcttacgacgtttttgaaggacatagattctctacacaaattaatgcataagcttaagcttttcggtagctgctcaggcctcaaacccaacatcgcaaaaacggagagatatgctaatgatgagaaccgctcctggaaatacattctagattcttgtttaaagaatgtgggaggaagctttctcctgaattgtaacttcgatgtttcttctctccccgttaatattccttgcttctacaaggaatgccttaagtcctggactaccttgatggagtgggataacgaaactttaaacggagtgttggaacagccaatatggaacaataaacttatttgcatccaaaacaaatcggtctattacccaaagctgataaagatgggaattttaacaattaggaatatgctaactgaatcaggaaacttcctttgttttaatgagttgaagcagaaagaaacaacattaacaacggctaattactttctttggttgggaatcgttcactcccttccttgcgagtggcgaaggatgattaaggcgggcaatatcggttcattttctcaacctacacagccaaggaatctttgttccgatcagatacgtgtcaagcttgatgaaaataatgtgcttgaaattcaagctttaactagtaaacaaatatacaaaaaacttgtgaccaagagaacaacagagccaacaagcaaagccaagtttacagctatcttttccgaaaacaatttggactgggcaaatatctataaaattccgttcaactcgacacttgatacgagaactagagcgtttcaactcaaaatacttcacagaattcttttcaccaattcatctctttttaagatgaaaatatccgccactccactttgcaccttttgtgacttggagagtgaaacccttgagcaccttttcgtggactgtgaatatgtgaaatcattctgggaagctttcaccgcttgggttaattccctaggcattgttcttaatcgaccaactggccaagaaataatgctcggaataacaggaaataacgacgattattattttactgggggactggacggtctggacggtgtttaccgagtgatcatgaaagcccgaatcttgtga

Transcript

evm.model.Ap13.2822

ATGATTATCGCCAGATTCTTACGCTATGGCGACAGGGAGAGAATAATTCGCGAAGCTTTCAAGTTGAAAGATACCGATTACAAAATCTACGAAGACATCCCTCAAGAGCTTTTAGATGAGAGGAAAAAGCTGCTTCCAGTTCTGCGCAAAGCCAAAAAGGAGGGAAAACGCGCCTTTTTTAGCGACACAATTAGCTTTATCGTGATTCGATCTAGTATGGTCCATACAGTTCCTCTGGGACCCGAGGAGACATATAGTACCAAGGCAGTTGAAAACTTTTGGAGTTCCCAATGGGACGGCAATCTCTTTTTTGCGCATGGCACCGAACACGCCCGTGGAGTTCTAGTCTTAATTAAAAAAGATTTGGAATTTGAGTTGAAACAATCAAAGTGTGATATCAATGGTCGATTCATCCTCCTTGAGGCAATTATACAGGACGTCAAATTTTATCTTTGCAATATTTACTCACCGAATAATTCAAAGGAACAAGTCGATTTCTTCACTAACGTTAAAAATCTTCTGCAGGAGAATATTTCGGAAACGAATCCGCATATTATTTTGGGTGGCGATTTTAATATGATTTTTGATACTAGTTTAGACTGTTTTGGAGGAAACCCAAAAATTAAAGATTGTGTAAAAATAGTTAATGATATCATGGTTGAGAATGATTTAGTCGATATTTGGAGAATTCGTAATGTGGGAAAAAAACGATTTACCTGGAGAAATAGCTCTTCAAAGCTTCAAAGGCGACTTGATTTTTGGCTTGTGAGCGATAATTTGCAGGATGATGTCAAGACATCTGAAATAGGCCCTTCTATCAAAAGCGATCATTCGTCAGTTTCTCTTGTTATAGATAGTGTTGCGGAGCAAAAACATGGACCCTCCTTTTGGAAACTTGACACCAGCCTTCTTGAGGATCCCGAGTATGTACAGATGATAAACACCGAATATTATAATTGGCTGAATGAGTTTCAAGAAATTTCAGACAAAAGGGTGTTATGGGATTTAATCAAGTATAGGATACGCCAAGTCTCGATTGGATACAGCAAGAAAAAACAGAAAGAAAGGACAACTGCTTTTAAGAAATTGGAAGAGGATCTTAAAAAAGCCGAAGAACGTTGTGATCAGGATCCAACAAACCAAAATATTCAGAATCGAGAAGAATTAAAGCAAAAGTATGAGTCAATGTACGACTACATCACCCAAGGTGCGATGATAAGATCTCGTGTCAACTGGTATGAGCAGGGTGAGAAAAACAATAAATACTTCTTAAATTTGGAAAATTTTAAAAAGGGAAGGAGTGTCATAAGAAACCTTAATATAAATGGAACAGATGATTTTACCACAGACCCCAAAATAATAATGAAGGAAATTCGAGAGTTTTATTCAGACCTTTATTCGGAAAGGGTGTCAGATGAGGAGGCTGCCGCTGCATTTTTAAACAGAGCCGATATACCGAAAATAAACGAGGACCTCAAATTATCTTGCGAAGGTCTTTTAACTGTGAATGAGACTTACAACGCTCTTTTAACCTTTGCGGATAACAAAACCCCAGGGAACGATGGGTTACCAGCAGAATTTTATAAGCGGTTCTGGCCCCTACTTGGGAAACAGCTGACTCAATGTTTTAACTATTCCTTTGAATACGGTCAACTGTCGAGTTCCCAATCACAAGCTGTTATCACCTTGATACAAAAGAAAGACAGAGACAAGCGCTTTGTGAAAAATTGGCGACCTATATCTCTTATGAATGTGGACGCTAAAATTGGGTCTAAATCTATTGCAAGGCGAATCTGCAAAGTGTTACCCACTATTATTCACTCGGATCAATGTGCATATGTTAAGGACAGATTGATATCAGACGCCCTTCGCACCATAGATGACGTTATGTGGTACACAGAAATCAATAAAATTCCCGGCTGGTTAGTTGCTATTGATTTTGAAAAGGCTTTTGACTCGGTGAATGTGGAATTTTTAATTAAGGCATTAGAAGCATTCAACTTTGGCCAGACTTTTATCAAATGGATAAGAACCTTTTACAATGGAGCAAAAAGCTGTGTTATAAACAATGGGTTCACTTCACACTATTTTGATCTTCAGCGAGGAGTACGACAAGGGGATCCACTCTCCCCGTACCTGTTTATTGTTGTTATGGAAGTACTGTCGATATCCATACGAAAAGATGTGGAAATAAAAGGATTAGTGGTAGACGAGAAAGAAATTAAGCTCACTAGCTTTGCGGATGATCTTACGACGTTTTTGAAGGACATAGATTCTCTACACAAATTAATGCATAAGCTTAAGCTTTTCGGTAGCTGCTCAGGCCTCAAACCCAACATCGCAAAAACGGAGAGATATGCTAATGATGAGAACCGCTCCTGGAAATACATTCTAGATTCTTGTTTAAAGAATGTGGGAGGAAGCTTTCTCCTGAATTGTAACTTCGATGTTTCTTCTCTCCCCGTTAATATTCCTTGCTTCTACAAGGAATGCCTTAAGTCCTGGACTACCTTGATGGAGTGGGATAACGAAACTTTAAACGGAGTGTTGGAACAGCCAATATGGAACAATAAACTTATTTGCATCCAAAACAAATCGGTCTATTACCCAAAGCTGATAAAGATGGGAATTTTAACAATTAGGAATATGCTAACTGAATCAGGAAACTTCCTTTGTTTTAATGAGTTGAAGCAGAAAGAAACAACATTAACAACGGCTAATTACTTTCTTTGGTTGGGAATCGTTCACTCCCTTCCTTGCGAGTGGCGAAGGATGATTAAGGCGGGCAATATCGGTTCATTTTCTCAACCTACACAGCCAAGGAATCTTTGTTCCGATCAGATACGTGTCAAGCTTGATGAAAATAATGTGCTTGAAATTCAAGCTTTAACTAGTAAACAAATATACAAAAAACTTGTGACCAAGAGAACAACAGAGCCAACAAGCAAAGCCAAGTTTACAGCTATCTTTTCCGAAAACAATTTGGACTGGGCAAATATCTATAAAATTCCGTTCAACTCGACACTTGATACGAGAACTAGAGCGTTTCAACTCAAAATACTTCACAGAATTCTTTTCACCAATTCATCTCTTTTTAAGATGAAAATATCCGCCACTCCACTTTGCACCTTTTGTGACTTGGAGAGTGAAACCCTTGAGCACCTTTTCGTGGACTGTGAATATGTGAAATCATTCTGGGAAGCTTTCACCGCTTGGGTTAATTCCCTAGGCATTGTTCTTAATCGACCAACTGGCCAAGAAATAATGCTCGGAATAACAGGAAATAACGACGATTATTATTTTACTGGGGGACTGGACGGTCTGGACGGTGTTTACCGAGTGATCATGAAAGCCCGAATCTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2822.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.