Genomic Location: Ap13:30716297...30720250
NR annotation: KAJ7390831.1, Solute carrier 49 member 4 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.2901 |
| Transcript |
| evm.model.Ap13.2901 |
| Protein |
| evm.model.Ap13.2901 |
| UniProt accession | Description |
|---|---|
| Q8BFQ6 | Solute carrier family 49 member 4 OS=Mus musculus OX=10090 GN=Slc49a4 PE=2 SV=1 |
| Q66H95 | Solute carrier family 49 member 4 OS=Rattus norvegicus OX=10116 GN=Slc49a4 PE=2 SV=1 |
| Q96SL1 | Solute carrier family 49 member 4 OS=Homo sapiens OX=9606 GN=SLC49A4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000479 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07690 all species → | MFS_1 | Major Facilitator Superfamily | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011701 all species → | Family | Major facilitator superfamily | Interproscan |
| IPR020846 all species → | Domain | Major facilitator superfamily domain | Interproscan |
| IPR049680 all species → | Family | Solute carrier family 49-like | Interproscan |
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10924 all species → | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| GO:0051184 all species → | Molecular Function | obsolete cofactor transmembrane transporter activity | Interproscan |
evm.model.Ap13.2901.Transcript abundance of evm.model.Ap13.2901 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
