Gene detail

Detailed information of evm.model.Ap13.2941 in Astrangia poculata

Genomic Location: Ap13:31087253...31106107
NR annotation: XP_020630898.1, uncharacterized protein LOC110067895 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2941

atgaagtgcgggcgcgggcaaacgtcgaatgcaacaagcattacgtcgagacgcaaaaacaatgttatgtttctgtgcgacgagtggaagtcttcaaagggtggtctgtccactttcaacagagaatttgctgttaaattggcaaaaacagcaaaagacagcatcaacgttcactgctacgtctcgcaaagcgacgagcttagtagagaagatgccagacaacatggagtgaatttaatcactgctcgaagtattccaggatcaaccgacccattggattggttgaaaattccaccaccggaacttccaaatcctgacattgtgatcggtcatggaaggaaatttgggactcctgcttatttcattctccaagccgcaaagtgcaagtgggtgcattttgttcatgtgttttgtgaagaccttggaaagtacaaggtaaaaacacaaagtgcttcccttgatacaatcgaagaaagcgagaagaaacataaaagtgaaattgagctgtgtaaagcagcagatttagttgttgctgtgggttcacgattacaacggaagtacagtaaaagtcttccaagtgttaaagtagaaatcatcactcctggaattatcgaaaagttttcctatgaaccatcacaactggtcaaagacacatcagtggtaaagaagttcaatgtctttatgtttggtcgagcaagctttgaagatcttaccctcaaaggttatgatattattgcaaatgccattggatcccttgacaagatgtttgagctaacatttgttggctcatcttctggtgaacaccgcaagattgaacagtggtttcttcacaacacatccataagccgcaaccaaataacaatccgcagctattgcagtgaacatgatgaacttaagaggatgtttcatgagtcagacatggttgcgcttccctcacgcacagaagggtttgggttggtcgccctggaagccatttctgctggtattcctgttcttgttgctggtgaatctggaatagctgaggctttgcaagaagtagaaggtggcatgtctttagttgttgaatcagatgatgctagtgagtgggcacagaggatccaacaactgtccaagcaaagtccagaagagcgacaaaacaatgccaagatactcagagagaactacaataaaacttactcttggagcaatgaatgtgagaaatttaaaaggatgtctcaggaattagtggaaagcttaaatgaatttagaatgaaacaagctgtagaccaagaagctagctctgcagaaagtcttgagcattcagttgttcaggcattatcaccaaaaacaaaaaggaagtttttttcgtatacacaagaaaaacagcaggctttcattgagggttacacatatatgtcaaaaagctgcactttatctctaaaaccagtggaaggcaaatcaagtatgactgctactcctctacttgatacatctaaggaagcaactccactcttacgagcagtgtcatcacttgagaaagaagcaaatgagaaagggatcaatgccacgggatcactgaaacgccagtttccgtcaacagcagtccctggatcccaccataataaattcagagctttggtgacagcttccaaaaccattcctgagcaaaggaacatgtccactcactctgtagtgttgaatcaaatgagcccgattcagagccaattaatgacagtagatcaacaagctcagaagttgagagactttttcagcaagatgactaggctagcgtcagagcgtaaaggtgttgttgccaagactgttaacgggttgatacaaagtgttgtggaaggaagacttactgaagaacaatttgaagcaaatctacaaacaacactcaatagtccaccccaaccaaatcttgttccctatttaaagaaaacacttcccctgttacgagcacaagaaaaggatgtcagtgctacaggattgctgaaaaaccagatggcatcaacagtgttttttagatcccatcacaatgaagtcagggcttcagtggcagcttccaaaaccagtgccaaggctgctgagaagttgcagcaaagtgttatgaaaacacctccactcttacgagcagagtcatcacttgagaaggaagcaaataagaaaggggtcaatgctacaggatcgctgaataaaccgatgacatcaacaacattccctcgatcccgtcataatgaagtcagagctttggtggcagcttccaaaaccattgctaaacaaaggaacatgcccagtataatgtcaaatcaaatgatcacaattcagaaccaagcagtgactgcagatcaacaagctcagaagctgactagcctgagagacttttttaggaacttgaccaggctggcatcagaggaaaagcctccagatgttgtcaagactgttaaagagttggtacaaggtgttgtggaaggaaaattgaccgcagaacaatttgcagcaaatctacaaacaacactcaatagaccaccccaaccaaatcttgttccctttttaaagaaaggacttccaatgttacaagcacaaatgaggaaagaagcaagtgagaaggacccaagtgcttcagggttgctgcaaaacccgatggcatcgacagcgatccctagattccatcacaatgaagtcagggcttcggtgacagcttccaaaaccagtgccatggctgttaaagagttgcagcaaagtgttgtggacaaaagacctacaagtgggaaacaaaagaggaaggaagccagtggacacaagattgttgatcagtgctctccatcacccagtaaagctaggaagacaggagatctagagatgtctgactctgacagtgactcttctaatgatgacaacgaatcaaactcttctggaacttag

Transcript

evm.model.Ap13.2941

ATGAAGTGCGGGCGCGGGCAAACGTCGAATGCAACAAGCATTACGTCGAGACGCAAAAACAATGTTATGTTTCTGTGCGACGAGTGGAAGTCTTCAAAGGGTGGTCTGTCCACTTTCAACAGAGAATTTGCTGTTAAATTGGCAAAAACAGCAAAAGACAGCATCAACGTTCACTGCTACGTCTCGCAAAGCGACGAGCTTAGTAGAGAAGATGCCAGACAACATGGAGTGAATTTAATCACTGCTCGAAGTATTCCAGGATCAACCGACCCATTGGATTGGTTGAAAATTCCACCACCGGAACTTCCAAATCCTGACATTGTGATCGGTCATGGAAGGAAATTTGGGACTCCTGCTTATTTCATTCTCCAAGCCGCAAAGTGCAAGTGGGTGCATTTTGTTCATGTGTTTTGTGAAGACCTTGGAAAGTACAAGGTAAAAACACAAAGTGCTTCCCTTGATACAATCGAAGAAAGCGAGAAGAAACATAAAAGTGAAATTGAGCTGTGTAAAGCAGCAGATTTAGTTGTTGCTGTGGGTTCACGATTACAACGGAAGTACAGTAAAAGTCTTCCAAGTGTTAAAGTAGAAATCATCACTCCTGGAATTATCGAAAAGTTTTCCTATGAACCATCACAACTGGTCAAAGACACATCAGTGGTAAAGAAGTTCAATGTCTTTATGTTTGGTCGAGCAAGCTTTGAAGATCTTACCCTCAAAGGTTATGATATTATTGCAAATGCCATTGGATCCCTTGACAAGATGTTTGAGCTAACATTTGTTGGCTCATCTTCTGGTGAACACCGCAAGATTGAACAGTGGTTTCTTCACAACACATCCATAAGCCGCAACCAAATAACAATCCGCAGCTATTGCAGTGAACATGATGAACTTAAGAGGATGTTTCATGAGTCAGACATGGTTGCGCTTCCCTCACGCACAGAAGGGTTTGGGTTGGTCGCCCTGGAAGCCATTTCTGCTGGTATTCCTGTTCTTGTTGCTGGTGAATCTGGAATAGCTGAGGCTTTGCAAGAAGTAGAAGGTGGCATGTCTTTAGTTGTTGAATCAGATGATGCTAGTGAGTGGGCACAGAGGATCCAACAACTGTCCAAGCAAAGTCCAGAAGAGCGACAAAACAATGCCAAGATACTCAGAGAGAACTACAATAAAACTTACTCTTGGAGCAATGAATGTGAGAAATTTAAAAGGATGTCTCAGGAATTAGTGGAAAGCTTAAATGAATTTAGAATGAAACAAGCTGTAGACCAAGAAGCTAGCTCTGCAGAAAGTCTTGAGCATTCAGTTGTTCAGGCATTATCACCAAAAACAAAAAGGAAGTTTTTTTCGTATACACAAGAAAAACAGCAGGCTTTCATTGAGGGTTACACATATATGTCAAAAAGCTGCACTTTATCTCTAAAACCAGTGGAAGGCAAATCAAGTATGACTGCTACTCCTCTACTTGATACATCTAAGGAAGCAACTCCACTCTTACGAGCAGTGTCATCACTTGAGAAAGAAGCAAATGAGAAAGGGATCAATGCCACGGGATCACTGAAACGCCAGTTTCCGTCAACAGCAGTCCCTGGATCCCACCATAATAAATTCAGAGCTTTGGTGACAGCTTCCAAAACCATTCCTGAGCAAAGGAACATGTCCACTCACTCTGTAGTGTTGAATCAAATGAGCCCGATTCAGAGCCAATTAATGACAGTAGATCAACAAGCTCAGAAGTTGAGAGACTTTTTCAGCAAGATGACTAGGCTAGCGTCAGAGCGTAAAGGTGTTGTTGCCAAGACTGTTAACGGGTTGATACAAAGTGTTGTGGAAGGAAGACTTACTGAAGAACAATTTGAAGCAAATCTACAAACAACACTCAATAGTCCACCCCAACCAAATCTTGTTCCCTATTTAAAGAAAACACTTCCCCTGTTACGAGCACAAGAAAAGGATGTCAGTGCTACAGGATTGCTGAAAAACCAGATGGCATCAACAGTGTTTTTTAGATCCCATCACAATGAAGTCAGGGCTTCAGTGGCAGCTTCCAAAACCAGTGCCAAGGCTGCTGAGAAGTTGCAGCAAAGTGTTATGAAAACACCTCCACTCTTACGAGCAGAGTCATCACTTGAGAAGGAAGCAAATAAGAAAGGGGTCAATGCTACAGGATCGCTGAATAAACCGATGACATCAACAACATTCCCTCGATCCCGTCATAATGAAGTCAGAGCTTTGGTGGCAGCTTCCAAAACCATTGCTAAACAAAGGAACATGCCCAGTATAATGTCAAATCAAATGATCACAATTCAGAACCAAGCAGTGACTGCAGATCAACAAGCTCAGAAGCTGACTAGCCTGAGAGACTTTTTTAGGAACTTGACCAGGCTGGCATCAGAGGAAAAGCCTCCAGATGTTGTCAAGACTGTTAAAGAGTTGGTACAAGGTGTTGTGGAAGGAAAATTGACCGCAGAACAATTTGCAGCAAATCTACAAACAACACTCAATAGACCACCCCAACCAAATCTTGTTCCCTTTTTAAAGAAAGGACTTCCAATGTTACAAGCACAAATGAGGAAAGAAGCAAGTGAGAAGGACCCAAGTGCTTCAGGGTTGCTGCAAAACCCGATGGCATCGACAGCGATCCCTAGATTCCATCACAATGAAGTCAGGGCTTCGGTGACAGCTTCCAAAACCAGTGCCATGGCTGTTAAAGAGTTGCAGCAAAGTGTTGTGGACAAAAGACCTACAAGTGGGAAACAAAAGAGGAAGGAAGCCAGTGGACACAAGATTGTTGATCAGTGCTCTCCATCACCCAGTAAAGCTAGGAAGACAGGAGATCTAGAGATGTCTGACTCTGACAGTGACTCTTCTAATGATGACAACGAATCAAACTCTTCTGGAACTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
D1BD84	D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) OX=446469 GN=mshA PE=3 SV=1
Q59002	Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1607 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan
IPR050194 all species →	Family	Glycosyltransferase group 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45947 all species →	SULFOQUINOVOSYL TRANSFERASE SQD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.2941.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.