Gene detail

Detailed information of evm.model.Ap13.2970 in Astrangia poculata

Genomic Location: Ap13:31329929...31342614
NR annotation: KAJ7365528.1, hypothetical protein OS493_005640 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.2970

atgatggacgacgaggaagcattgaaagagagtgtgtctaacctgagatcggccatacttcttgggagaaccgacatcattcgaagcatactgtctacagctgctgaatacagggaagaagatggcttgtttggtgatgacgaggaagaggatgaagctcagctgggtgttcctaagcagttttattatgacgagtatgacgacccttatgacattctgaagatgatgatgaactatgttgataatgatgccggtacatgtcttcatcttgccaccaaacttggatatgcagatgcagtacgagctctgcttgcagcaggatcggatcccaccattcctaacagtgaaggagcctcgtcatttgactactgtaccgacaaggcaatcctgggagtttataatgaggaactactgcaggctgctgccaactcaaatacacctagggtgcgtaaactcctgaaggcaggagtcagtgtgaatgccagtgatggcgcagcgagtgacaacaaagcgcttcactgggccgctagctatggaaatgctgacattgttaagcttctgtgtgaaaatgaggctctagtcaacatcactaacaaagcaggagtaaccccactccatgatgctgtaaacagaggagacatagagatcgccaaaatattactggaacacggagctgcgacagatatcaaagccaaagaaggagcatgcaaagggaaaacagcaatggatttggtcaacactcaggaaatgaaagaattactcagttcacccgttacgaaagaaaccaagcctgtcactaatggaacaatcagtgaacaagctttggattcagagtcactactttctgagatgagtgctctatcactaactccaggaagtaccgcctcttctccaccctccacaccctccgcccagtcccgtctacagatgccgtcacgaatgaccccaccagccaacagtgaacccctggacccaacatttcatcttgtgtggccacaccctcaggagatcactcagattagggggaccaggtttttcccaacatcttgccttccagttgtgttattcagggaactacaatcaaatcactttcaggaactttgtgaaatttggaacactatggaagaaagttttgagcaagttggatataccctggatctcaaggttgttggagaagcatctgcgaggagaggaagtgttgctagcagcatagagtgtcacatgtgtccaaactcattcaacaagtcagagagttatagaatcaccatttccactgttaaggttgttttaactgccagtgatctgccaggcatgtggtatgctgtaaacactttacttcagatcgtgagacttttccatggcaacggaataccaagaatacagttaaatgactggccggacttgaaatatagaggagtattatgggatgtgtccacaggtcgtgttccaacattggaaacagtgttttctcttattgatgttctgtctgccatgaaaatcaaccaactacaattgtacatgcaaaacacattctccttcattgggcatgagacagtttggaggaatgcgacaccttacaatgcaagtgacatcatcaaaatagacagttattgtagaagaagatacatcgagcttgtgcctcatgttgatagcttatctgggttcagtcagtggttgaagttcaagacgtataaacatttagctgaggaggaagtcgaatttgatccacgacaagaaagagttccgtcctgtctctgtccaacaaatgaggaaagcatgaatctggttcttggtctgcatacacaagccttttcttgcttctcatccacaagatttgttcacgctggcttggacatgacgccagaatttgggaaaggaaaatcacacatcatagcacaggctaaaggagtggacgaggtttacatgagccatcttcggaccgtgcaacagtcctgctcaaggcacggacgcacgcttcagttctgggccaacgcccttcatgatgaccctgaacagttgtggaatctcccccctggagtcatagctatggaatatggaaatacggttgatcatgactttttcaaattttgtaaaccgctggtcgatgctggtgtcagcttctttgtttgtcctggaactggctcgtggaacagtgtttgtggtaacacagaagaaagtatttcagtaatgaacaatgctgtgcaaacggctgttatgtgcaacgctctcggtgtccttatctgtgattggtccttgcctggtcacgtgaatcctctgagcgtcagtatcccagcattactcgcgggtgctggatttgcgtggaaggcctccgcagatgtgtcatctgtaaggtcatccctccccgatgttttaagtcaacatgtgtttatggatagttctgggacatttggccgagcactaatggacctgggtacaacacactcgattttgctcaaagatgatgcgatagagtcacgtgttactgctgacgacagaagagttcaaccagttgcgcatgctcctggtagtaagctgctgtggcaaattttagagactgaaggctcatgtaatattgacaaagttacttcggatagcttgcagaaagccgtgcgacaaatacgacaatgccacaagaagtttatagcggcggacctcagatgcaaacagaaaactgatattttaaaggaacttgacatattggtagaaatattactattcacgaccaggatttgccgtacgctgcttttaaaccgaaaacagaactcgagcggttcactggaagatttacccgctatcaccaaaacggacctagcaaacaaactgttggtcctggtggatttatatcagaaagcttatttgttacgaaacaaacagggaggactcttaaacgctctgcaacttcttcagaacttcctccaacatctgctacccgaggagaaaaaatga

Transcript

evm.model.Ap13.2970

ATGATGGACGACGAGGAAGCATTGAAAGAGAGTGTGTCTAACCTGAGATCGGCCATACTTCTTGGGAGAACCGACATCATTCGAAGCATACTGTCTACAGCTGCTGAATACAGGGAAGAAGATGGCTTGTTTGGTGATGACGAGGAAGAGGATGAAGCTCAGCTGGGTGTTCCTAAGCAGTTTTATTATGACGAGTATGACGACCCTTATGACATTCTGAAGATGATGATGAACTATGTTGATAATGATGCCGGTACATGTCTTCATCTTGCCACCAAACTTGGATATGCAGATGCAGTACGAGCTCTGCTTGCAGCAGGATCGGATCCCACCATTCCTAACAGTGAAGGAGCCTCGTCATTTGACTACTGTACCGACAAGGCAATCCTGGGAGTTTATAATGAGGAACTACTGCAGGCTGCTGCCAACTCAAATACACCTAGGGTGCGTAAACTCCTGAAGGCAGGAGTCAGTGTGAATGCCAGTGATGGCGCAGCGAGTGACAACAAAGCGCTTCACTGGGCCGCTAGCTATGGAAATGCTGACATTGTTAAGCTTCTGTGTGAAAATGAGGCTCTAGTCAACATCACTAACAAAGCAGGAGTAACCCCACTCCATGATGCTGTAAACAGAGGAGACATAGAGATCGCCAAAATATTACTGGAACACGGAGCTGCGACAGATATCAAAGCCAAAGAAGGAGCATGCAAAGGGAAAACAGCAATGGATTTGGTCAACACTCAGGAAATGAAAGAATTACTCAGTTCACCCGTTACGAAAGAAACCAAGCCTGTCACTAATGGAACAATCAGTGAACAAGCTTTGGATTCAGAGTCACTACTTTCTGAGATGAGTGCTCTATCACTAACTCCAGGAAGTACCGCCTCTTCTCCACCCTCCACACCCTCCGCCCAGTCCCGTCTACAGATGCCGTCACGAATGACCCCACCAGCCAACAGTGAACCCCTGGACCCAACATTTCATCTTGTGTGGCCACACCCTCAGGAGATCACTCAGATTAGGGGGACCAGGTTTTTCCCAACATCTTGCCTTCCAGTTGTGTTATTCAGGGAACTACAATCAAATCACTTTCAGGAACTTTGTGAAATTTGGAACACTATGGAAGAAAGTTTTGAGCAAGTTGGATATACCCTGGATCTCAAGGTTGTTGGAGAAGCATCTGCGAGGAGAGGAAGTGTTGCTAGCAGCATAGAGTGTCACATGTGTCCAAACTCATTCAACAAGTCAGAGAGTTATAGAATCACCATTTCCACTGTTAAGGTTGTTTTAACTGCCAGTGATCTGCCAGGCATGTGGTATGCTGTAAACACTTTACTTCAGATCGTGAGACTTTTCCATGGCAACGGAATACCAAGAATACAGTTAAATGACTGGCCGGACTTGAAATATAGAGGAGTATTATGGGATGTGTCCACAGGTCGTGTTCCAACATTGGAAACAGTGTTTTCTCTTATTGATGTTCTGTCTGCCATGAAAATCAACCAACTACAATTGTACATGCAAAACACATTCTCCTTCATTGGGCATGAGACAGTTTGGAGGAATGCGACACCTTACAATGCAAGTGACATCATCAAAATAGACAGTTATTGTAGAAGAAGATACATCGAGCTTGTGCCTCATGTTGATAGCTTATCTGGGTTCAGTCAGTGGTTGAAGTTCAAGACGTATAAACATTTAGCTGAGGAGGAAGTCGAATTTGATCCACGACAAGAAAGAGTTCCGTCCTGTCTCTGTCCAACAAATGAGGAAAGCATGAATCTGGTTCTTGGTCTGCATACACAAGCCTTTTCTTGCTTCTCATCCACAAGATTTGTTCACGCTGGCTTGGACATGACGCCAGAATTTGGGAAAGGAAAATCACACATCATAGCACAGGCTAAAGGAGTGGACGAGGTTTACATGAGCCATCTTCGGACCGTGCAACAGTCCTGCTCAAGGCACGGACGCACGCTTCAGTTCTGGGCCAACGCCCTTCATGATGACCCTGAACAGTTGTGGAATCTCCCCCCTGGAGTCATAGCTATGGAATATGGAAATACGGTTGATCATGACTTTTTCAAATTTTGTAAACCGCTGGTCGATGCTGGTGTCAGCTTCTTTGTTTGTCCTGGAACTGGCTCGTGGAACAGTGTTTGTGGTAACACAGAAGAAAGTATTTCAGTAATGAACAATGCTGTGCAAACGGCTGTTATGTGCAACGCTCTCGGTGTCCTTATCTGTGATTGGTCCTTGCCTGGTCACGTGAATCCTCTGAGCGTCAGTATCCCAGCATTACTCGCGGGTGCTGGATTTGCGTGGAAGGCCTCCGCAGATGTGTCATCTGTAAGGTCATCCCTCCCCGATGTTTTAAGTCAACATGTGTTTATGGATAGTTCTGGGACATTTGGCCGAGCACTAATGGACCTGGGTACAACACACTCGATTTTGCTCAAAGATGATGCGATAGAGTCACGTGTTACTGCTGACGACAGAAGAGTTCAACCAGTTGCGCATGCTCCTGGTAGTAAGCTGCTGTGGCAAATTTTAGAGACTGAAGGCTCATGTAATATTGACAAAGTTACTTCGGATAGCTTGCAGAAAGCCGTGCGACAAATACGACAATGCCACAAGAAGTTTATAGCGGCGGACCTCAGATGCAAACAGAAAACTGATATTTTAAAGGAACTTGACATATTGGTAGAAATATTACTATTCACGACCAGGATTTGCCGTACGCTGCTTTTAAACCGAAAACAGAACTCGAGCGGTTCACTGGAAGATTTACCCGCTATCACCAAAACGGACCTAGCAAACAAACTGTTGGTCCTGGTGGATTTATATCAGAAAGCTTATTTGTTACGAAACAAACAGGGAGGACTCTTAAACGCTCTGCAACTTCTTCAGAACTTCCTCCAACATCTGCTACCCGAGGAGAAAAAATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02838 all species →	Glyco_hydro_20b	Glycosyl hydrolase family 20, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025705 all species →	Family	Beta-hexosaminidase	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR015882 all species →	Domain	Beta-hexosaminidase, bacterial type, N-terminal	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600 all species →	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004563 all species →	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17336	PLS3; plastin-3	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.