Gene detail

Detailed information of evm.model.Ap13.3001 in Astrangia poculata

Genomic Location: Ap13:31756715...31776486
NR annotation: CAH3128674.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.3001

ctgcacaaaactatgaaggttcatctctgcttcttgtcagtctcggtcggactttgttgggttttggcgccaaccggttcaaaggctcaagacgacgataaatcagagtcgaaatgggggccgtggggcgagtggaccccatgctcccgaacgtgtggtgtaggtgcgtcctaccaggaacgagagtgcctggaaaaggaaaaaccagacgattattgcaaaggaagtaagcgtatatacaggacatgtaatattcaagattgtccagaaggctcaagggattttcgtcttgaacagtgcgaatcttacaacaatcgaacacttgatggacgtagatacaaatgggttccctacataccagtacacgagagatgtgttctgaactgcatgcctaaaggggaatacttcttcatgcgatgggcagataaagtggtggatggaacgacatgctctgtggacacatacgacatttgtgtggatggaagatgcgagaaacttggttgtgatctcattttgaattccaatgcaaaagaggataaatgtcgagtttgcaatggtaatggaaaaaactgcaggacgcacagcggagtcaatacagaggaaggcgatggatataaagaaattgtggtgattcccgctagtgccactaacatcaacattcaagaaacgactccctcgccacattttctggctctttctgattcattcagaaattacttctttaacggtgactacgtcataacaaaccctgccaagcacaaagtggccggaaccgtttttacttacgagcgaacccgctttggacaggagagaatcttctcattaggaccgactacagttcctgtgcacgtcgaggttcttcttttgggagaagagaaaaatcctggcatttcttacgagtattctgtgccaacatcagtgacgacacttcctgagcgcactcagttttcctggaggactggcgagtttgataagtgcagtacatcgtgtgctggaggagagcaaaagagaaaagtgttctgtgttcgtgaagacaacggagaagaagttgaggattcaaactgtaaagaagacgagaagccatcacataaacaaaactgtaaccaacaaccttgtccagcgagctggtttgtaagcgtctggagtgcttgctctctcacatgcggtcgaggcaaacaggtcagacgagttcactgccagcataccgtggaaggaggagagactgttatgatcccggatgaacggtgcccaggtcccaaaccgactattatgcgcgtgtgtcagatggagaagagctgtcctggatggtcagcggctcaatggacagagtgttccgtctcgtgtggcatgggatcgaggaaccgtgaggtcacgtgtaagacgcttgataccaaggtagttttgccgtcagaaagctgtaacctcgcattgaaaccaaaagaaacagagaaatgcaacccaggcccttgtactgtcacatggttggcgtcgaactggagcgagtgttatccaaaatgtggcaagggaatgagtacgagaatggtttactgcgtcggcatcaccaacaaggatgagaagtacccggatgaactgtgtgatagttcctctcgaccaatcagcaagaaggtgtgttccagtgacgcggtgtgcccggcaatgtggcacgcctcacaatggagtaagtgcacaacttcatgtggcgtgggtatgcagatgagaaatgtaatgtgtgccaagaaggagggagccaaaatactcagaatcctgtccaaagatcagtgcaaaaaagaaaaggagatgactggaatacaaaagtgttctgtgcgcccctgtcaggcgggatggtacatattcccttgggagccgtgttccgcaacctgcggtcagggtttgaggcggagaagtgtaaagtgtcttgctgactcaaaggaagaccctgaagaaaaatggtgcaatccagatgacaaacctgtatcggaagaaaaatgtttggaggaagaatgcaaagtccccagcacaccaaaagaaaccacgaccacagtgacgacagagcaaagcagtcctcctactaccgtaatcatagcaacaacgacagctgctccctctactactaaagagattacaactacggctgcaccatcgacttccagttcttctccaccaacaacagacacccccattaccaccccaccctccactaccaccaccctaccccctgctactactacgtcaccccctgatactactaccccaccccctgatatcactaccccaccccctgctattaccacctttcctcccgtttctactaccgtaccgcccacaactaccccacccccgactacaacgccatcccccactactccagaaatcacgacggaacctcctacaactgcacggagatttcaaccagccaagatcactcagcctccaaaggatataatggcgtatgttggcacagaagtgttgtttcgttgccgagcaacaggctatccaacgcctgtcgtaagctggcgtaaaggctcaatccccgtcagcagcctggaaacagacagaatacaaatccttgccaacggcgacctcagggtagcggatatcacagagggcgacaacgacgtctacacgtgcattgcaacaaactttgttgggccaatggacaccaaagaagcgaatttggctgtaatagttccagtctccgtatcggtatcgcctaataatgctaccgcgagtcctggtgacgatgttacaatcacgtgcacgtcaagtggtataccgacaccaatcgtagaatggtataaagatgatacctctttgaacagtcagggacgagtgagagtatcaagaacacgtgttataatatcacaagttcaaccgtcagacagtgggtattaccaatgccgagcccgccataactacggctcagccagcgacaaaatgtatctgaatgtcatcgagaagaaagccacgaaagaaccaaccgagcctccatttaaatgtgaagacaatccttatattgcccactgtacagttgttcgtcaagtaaactactgctgcatcccttactacatgaaggcttgttgtaaaacctgcgaggatcttctacccaaatgtaaaaactaa

Transcript

evm.model.Ap13.3001

CTGCACAAAACTATGAAGGTTCATCTCTGCTTCTTGTCAGTCTCGGTCGGACTTTGTTGGGTTTTGGCGCCAACCGGTTCAAAGGCTCAAGACGACGATAAATCAGAGTCGAAATGGGGGCCGTGGGGCGAGTGGACCCCATGCTCCCGAACGTGTGGTGTAGGTGCGTCCTACCAGGAACGAGAGTGCCTGGAAAAGGAAAAACCAGACGATTATTGCAAAGGAAGTAAGCGTATATACAGGACATGTAATATTCAAGATTGTCCAGAAGGCTCAAGGGATTTTCGTCTTGAACAGTGCGAATCTTACAACAATCGAACACTTGATGGACGTAGATACAAATGGGTTCCCTACATACCAGTACACGAGAGATGTGTTCTGAACTGCATGCCTAAAGGGGAATACTTCTTCATGCGATGGGCAGATAAAGTGGTGGATGGAACGACATGCTCTGTGGACACATACGACATTTGTGTGGATGGAAGATGCGAGAAACTTGGTTGTGATCTCATTTTGAATTCCAATGCAAAAGAGGATAAATGTCGAGTTTGCAATGGTAATGGAAAAAACTGCAGGACGCACAGCGGAGTCAATACAGAGGAAGGCGATGGATATAAAGAAATTGTGGTGATTCCCGCTAGTGCCACTAACATCAACATTCAAGAAACGACTCCCTCGCCACATTTTCTGGCTCTTTCTGATTCATTCAGAAATTACTTCTTTAACGGTGACTACGTCATAACAAACCCTGCCAAGCACAAAGTGGCCGGAACCGTTTTTACTTACGAGCGAACCCGCTTTGGACAGGAGAGAATCTTCTCATTAGGACCGACTACAGTTCCTGTGCACGTCGAGGTTCTTCTTTTGGGAGAAGAGAAAAATCCTGGCATTTCTTACGAGTATTCTGTGCCAACATCAGTGACGACACTTCCTGAGCGCACTCAGTTTTCCTGGAGGACTGGCGAGTTTGATAAGTGCAGTACATCGTGTGCTGGAGGAGAGCAAAAGAGAAAAGTGTTCTGTGTTCGTGAAGACAACGGAGAAGAAGTTGAGGATTCAAACTGTAAAGAAGACGAGAAGCCATCACATAAACAAAACTGTAACCAACAACCTTGTCCAGCGAGCTGGTTTGTAAGCGTCTGGAGTGCTTGCTCTCTCACATGCGGTCGAGGCAAACAGGTCAGACGAGTTCACTGCCAGCATACCGTGGAAGGAGGAGAGACTGTTATGATCCCGGATGAACGGTGCCCAGGTCCCAAACCGACTATTATGCGCGTGTGTCAGATGGAGAAGAGCTGTCCTGGATGGTCAGCGGCTCAATGGACAGAGTGTTCCGTCTCGTGTGGCATGGGATCGAGGAACCGTGAGGTCACGTGTAAGACGCTTGATACCAAGGTAGTTTTGCCGTCAGAAAGCTGTAACCTCGCATTGAAACCAAAAGAAACAGAGAAATGCAACCCAGGCCCTTGTACTGTCACATGGTTGGCGTCGAACTGGAGCGAGTGTTATCCAAAATGTGGCAAGGGAATGAGTACGAGAATGGTTTACTGCGTCGGCATCACCAACAAGGATGAGAAGTACCCGGATGAACTGTGTGATAGTTCCTCTCGACCAATCAGCAAGAAGGTGTGTTCCAGTGACGCGGTGTGCCCGGCAATGTGGCACGCCTCACAATGGAGTAAGTGCACAACTTCATGTGGCGTGGGTATGCAGATGAGAAATGTAATGTGTGCCAAGAAGGAGGGAGCCAAAATACTCAGAATCCTGTCCAAAGATCAGTGCAAAAAAGAAAAGGAGATGACTGGAATACAAAAGTGTTCTGTGCGCCCCTGTCAGGCGGGATGGTACATATTCCCTTGGGAGCCGTGTTCCGCAACCTGCGGTCAGGGTTTGAGGCGGAGAAGTGTAAAGTGTCTTGCTGACTCAAAGGAAGACCCTGAAGAAAAATGGTGCAATCCAGATGACAAACCTGTATCGGAAGAAAAATGTTTGGAGGAAGAATGCAAAGTCCCCAGCACACCAAAAGAAACCACGACCACAGTGACGACAGAGCAAAGCAGTCCTCCTACTACCGTAATCATAGCAACAACGACAGCTGCTCCCTCTACTACTAAAGAGATTACAACTACGGCTGCACCATCGACTTCCAGTTCTTCTCCACCAACAACAGACACCCCCATTACCACCCCACCCTCCACTACCACCACCCTACCCCCTGCTACTACTACGTCACCCCCTGATACTACTACCCCACCCCCTGATATCACTACCCCACCCCCTGCTATTACCACCTTTCCTCCCGTTTCTACTACCGTACCGCCCACAACTACCCCACCCCCGACTACAACGCCATCCCCCACTACTCCAGAAATCACGACGGAACCTCCTACAACTGCACGGAGATTTCAACCAGCCAAGATCACTCAGCCTCCAAAGGATATAATGGCGTATGTTGGCACAGAAGTGTTGTTTCGTTGCCGAGCAACAGGCTATCCAACGCCTGTCGTAAGCTGGCGTAAAGGCTCAATCCCCGTCAGCAGCCTGGAAACAGACAGAATACAAATCCTTGCCAACGGCGACCTCAGGGTAGCGGATATCACAGAGGGCGACAACGACGTCTACACGTGCATTGCAACAAACTTTGTTGGGCCAATGGACACCAAAGAAGCGAATTTGGCTGTAATAGTTCCAGTCTCCGTATCGGTATCGCCTAATAATGCTACCGCGAGTCCTGGTGACGATGTTACAATCACGTGCACGTCAAGTGGTATACCGACACCAATCGTAGAATGGTATAAAGATGATACCTCTTTGAACAGTCAGGGACGAGTGAGAGTATCAAGAACACGTGTTATAATATCACAAGTTCAACCGTCAGACAGTGGGTATTACCAATGCCGAGCCCGCCATAACTACGGCTCAGCCAGCGACAAAATGTATCTGAATGTCATCGAGAAGAAAGCCACGAAAGAACCAACCGAGCCTCCATTTAAATGTGAAGACAATCCTTATATTGCCCACTGTACAGTTGTTCGTCAAGTAAACTACTGCTGCATCCCTTACTACATGAAGGCTTGTTGTAAAACCTGCGAGGATCTTCTACCCAAATGTAAAAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q868Z9	Papilin OS=Drosophila melanogaster OX=7227 GN=Ppn PE=1 SV=2
Q9EPX2	Papilin OS=Mus musculus OX=10090 GN=Papln PE=2 SV=2
Q8TE57	A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Homo sapiens OX=9606 GN=ADAMTS16 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001350 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR010909 all species →	Domain	PLAC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.3001.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.