Gene detail

Detailed information of evm.model.Ap13.3019 in Astrangia poculata

Genomic Location: Ap13:31932013...31937029
NR annotation: XP_020605163.1, sprT-like domain-containing protein Spartan [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0G2L7I0	DNA-dependent metalloprotease SPRTN OS=Danio rerio OX=7955 GN=sprtn PE=3 SV=1
D3ZVU1	DNA-dependent metalloprotease SPRTN OS=Rattus norvegicus OX=10116 GN=Sprtn PE=3 SV=1
G3X912	DNA-dependent metalloprotease SPRTN OS=Mus musculus OX=10090 GN=Sprtn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005080 (this species only)
Ubiquitin family	UBD\|ZnF\|UBZ · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10263 all species →	SprT-like	SprT-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006640 all species →	Domain	SprT-like	Interproscan
IPR006642 all species →	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR044245 all species →	Family	SprT-like domain-containing protein Spartan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21220 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24051	SPRTN; SprT-like domain-contaning protein Spartan	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.