Gene detail

Detailed information of evm.model.Ap13.3047 in Astrangia poculata

Genomic Location: Ap13:32172786...32188709
NR annotation: XP_020603473.1, tubulin polyglutamylase TTLL5-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.3047

atgcccagaccacagattcgtgacggatattctgacactgattctgcagtgacagaaaatgatgaatgtggagaggaatctgaaataccagtagcttctcatgtggaggaaccttgtgaagagtcagaaggcaaaactagcatcatcaaatggagtggtcccaataagaagttccccttgattcatttctctcctcatgttctgttgctggctttgccaccagaatcaaaatctgaggccgaaaagtaccatctaacatataaatttgtgaagactgaatgtaaacttgtgcgaagcatcctgagtgttcactgcttcagagaggttcaccccaacagttcaaactttaatttgatgtggactgggtcacacatcaagccccatactctgagaggcctccaggacttccaaaaaattaatcatttcccaagatcttatgaacttaccaggaaggacaagctttacaagaatatccagcgaatgcaacattctaagggtgtgaaacattttgattttattcctgaaagctacgtcttaccagaggagtttaacgagtttaatgctgcatttctaaaggacagaaaaccatggattgttaaacctgttgcttcttcacgtggcagaggaatttatcttgtcagtcatcccagtcatgttcctcttgatgacaatctcttagtttgcaagtacatcagtaatccattgcttgttgatggtttcaagtttgaccttagattgtatgttggtgtgacatgttttgatcctgtaagagtttacctctatgaagaaggcttaacaagatttgctactgttaaatatgacaagacaggcaaaaacatcaagaatgtttgcatgcatttgacaaactatagcgtcaacaagaaaaatgcagactttgtcaggtgtcctgaccctgaagtggaggattttgggaacaaatggagcatgagtgctatgctaagatatctcaagcagatggggaaggacactacagctctgatgatgaggatagaagatgttgtgatcaagacaatcctagctggggaactacacattgcatctgcctgtaaaatgttcatgccttctccaggaaactgctttgaaatatatggatttgacattcttgttgatgaaaatctgcgtccttggttgttagaagtcaacttgtctccgtcacttgcttgtgactctccattggatctgaagatcaagtctcatctggtatcggacatgtttaatttaattggctttgctgctcatgatccgatggttcgtaagcttcctacccgacgttttgtggattatccacagaagaatcgatatcagaggcagcgatcggctacagccggtggagttgtggcgccaaactcgcgaccattgtcttcaacgacaagaaagaaatctgataatggtttgacagccgaggagacgaggatattacgtcacacgcgggaagaattctccaggaggggagggtcatttctggagcatcgaacaactcacaatcacatgttgcattctaaactgtttccaggaagaaaatcctcttttcaaagacccagtacagcgagcttttcctcagcaggagcgcgagcgagaagtatcacgtctcatggagcgccacagtctaaagttagcctaatagtggaatcggcagaggtatctgataatgtcagcctcggcatcaaggagagacttgtttgctacgagaggaaacttgacagctggagtccctctcttcttcgaacaaaaaaagccctgggaagcacaaccccaagcgcaggtaccccaagtgcaagccaagagacatctgaagcacctcgaggcgactccatctcctctcgcttgacgcccgatggacaattggtgacgaattacgtggaggagaaaccggcttctcatccgcgaggaccaaagcccttattggattcagaaacacacgcaccatatcgagtatcgtcagctggcccccatccaaggcacttccaggaagccacgcgggcgcagaaaccacctctgccgaccagcaatgaaacagtgtcaaagcgcgtgctgtctgcgcagccgcgataccagccaatcagagtggatgacatcatggcaaaggctggcacacttacgaagctccaagccaggcaggcattcgcaatgtatctacagcgagtccaacaaagactagttcacgagacaagttatgattcagaggactcgagagatagcacggactctaaacaagacgatcaaatgaacttggtgattcgttttctgaagaaagcggcgagtaatttacaacagccatttaaagttgttgtaccaagtgtcaagctgccattacatgacaggagacgaattcttgccaaacagctgggagacttcgttcgcgtttatggaaaggaaaccatgcaaattcagaagcgacaggaaataaaccgcacatacgggctttcaaggagcaattcgttcatgggtgaaatcccggatgaggagttcaaggtctttatggccattgcaagcgagaccgagttggaagacctgttaactacctacaccaaactgaacaagaacgccagtgtgttcttaggagggagaccggagaagagctctgaggagagcgccaccaaagcgcctcacgacacggtcctgtctaggagaaaagaaggggacagctcgaatcccattccagacgaggaacgtatgaggtccaccgaggaccttagtagcacaggccctacggtgtcagatcgacacgcacgatcgctgacagctgtttctgcatatggcgcctcagtggccctcaacaaaacccggcagcggccggtgtcggccaaggtaacaagttcacaaggaactgacaggatgcaccgcgttagtcgcccagtatcggccaagccgtactcgcgtgatatgatgagaacagttgaagacaccggggaaaccaggagcgcggatggaggcaagtga

Transcript

evm.model.Ap13.3047

ATGCCCAGACCACAGATTCGTGACGGATATTCTGACACTGATTCTGCAGTGACAGAAAATGATGAATGTGGAGAGGAATCTGAAATACCAGTAGCTTCTCATGTGGAGGAACCTTGTGAAGAGTCAGAAGGCAAAACTAGCATCATCAAATGGAGTGGTCCCAATAAGAAGTTCCCCTTGATTCATTTCTCTCCTCATGTTCTGTTGCTGGCTTTGCCACCAGAATCAAAATCTGAGGCCGAAAAGTACCATCTAACATATAAATTTGTGAAGACTGAATGTAAACTTGTGCGAAGCATCCTGAGTGTTCACTGCTTCAGAGAGGTTCACCCCAACAGTTCAAACTTTAATTTGATGTGGACTGGGTCACACATCAAGCCCCATACTCTGAGAGGCCTCCAGGACTTCCAAAAAATTAATCATTTCCCAAGATCTTATGAACTTACCAGGAAGGACAAGCTTTACAAGAATATCCAGCGAATGCAACATTCTAAGGGTGTGAAACATTTTGATTTTATTCCTGAAAGCTACGTCTTACCAGAGGAGTTTAACGAGTTTAATGCTGCATTTCTAAAGGACAGAAAACCATGGATTGTTAAACCTGTTGCTTCTTCACGTGGCAGAGGAATTTATCTTGTCAGTCATCCCAGTCATGTTCCTCTTGATGACAATCTCTTAGTTTGCAAGTACATCAGTAATCCATTGCTTGTTGATGGTTTCAAGTTTGACCTTAGATTGTATGTTGGTGTGACATGTTTTGATCCTGTAAGAGTTTACCTCTATGAAGAAGGCTTAACAAGATTTGCTACTGTTAAATATGACAAGACAGGCAAAAACATCAAGAATGTTTGCATGCATTTGACAAACTATAGCGTCAACAAGAAAAATGCAGACTTTGTCAGGTGTCCTGACCCTGAAGTGGAGGATTTTGGGAACAAATGGAGCATGAGTGCTATGCTAAGATATCTCAAGCAGATGGGGAAGGACACTACAGCTCTGATGATGAGGATAGAAGATGTTGTGATCAAGACAATCCTAGCTGGGGAACTACACATTGCATCTGCCTGTAAAATGTTCATGCCTTCTCCAGGAAACTGCTTTGAAATATATGGATTTGACATTCTTGTTGATGAAAATCTGCGTCCTTGGTTGTTAGAAGTCAACTTGTCTCCGTCACTTGCTTGTGACTCTCCATTGGATCTGAAGATCAAGTCTCATCTGGTATCGGACATGTTTAATTTAATTGGCTTTGCTGCTCATGATCCGATGGTTCGTAAGCTTCCTACCCGACGTTTTGTGGATTATCCACAGAAGAATCGATATCAGAGGCAGCGATCGGCTACAGCCGGTGGAGTTGTGGCGCCAAACTCGCGACCATTGTCTTCAACGACAAGAAAGAAATCTGATAATGGTTTGACAGCCGAGGAGACGAGGATATTACGTCACACGCGGGAAGAATTCTCCAGGAGGGGAGGGTCATTTCTGGAGCATCGAACAACTCACAATCACATGTTGCATTCTAAACTGTTTCCAGGAAGAAAATCCTCTTTTCAAAGACCCAGTACAGCGAGCTTTTCCTCAGCAGGAGCGCGAGCGAGAAGTATCACGTCTCATGGAGCGCCACAGTCTAAAGTTAGCCTAATAGTGGAATCGGCAGAGGTATCTGATAATGTCAGCCTCGGCATCAAGGAGAGACTTGTTTGCTACGAGAGGAAACTTGACAGCTGGAGTCCCTCTCTTCTTCGAACAAAAAAAGCCCTGGGAAGCACAACCCCAAGCGCAGGTACCCCAAGTGCAAGCCAAGAGACATCTGAAGCACCTCGAGGCGACTCCATCTCCTCTCGCTTGACGCCCGATGGACAATTGGTGACGAATTACGTGGAGGAGAAACCGGCTTCTCATCCGCGAGGACCAAAGCCCTTATTGGATTCAGAAACACACGCACCATATCGAGTATCGTCAGCTGGCCCCCATCCAAGGCACTTCCAGGAAGCCACGCGGGCGCAGAAACCACCTCTGCCGACCAGCAATGAAACAGTGTCAAAGCGCGTGCTGTCTGCGCAGCCGCGATACCAGCCAATCAGAGTGGATGACATCATGGCAAAGGCTGGCACACTTACGAAGCTCCAAGCCAGGCAGGCATTCGCAATGTATCTACAGCGAGTCCAACAAAGACTAGTTCACGAGACAAGTTATGATTCAGAGGACTCGAGAGATAGCACGGACTCTAAACAAGACGATCAAATGAACTTGGTGATTCGTTTTCTGAAGAAAGCGGCGAGTAATTTACAACAGCCATTTAAAGTTGTTGTACCAAGTGTCAAGCTGCCATTACATGACAGGAGACGAATTCTTGCCAAACAGCTGGGAGACTTCGTTCGCGTTTATGGAAAGGAAACCATGCAAATTCAGAAGCGACAGGAAATAAACCGCACATACGGGCTTTCAAGGAGCAATTCGTTCATGGGTGAAATCCCGGATGAGGAGTTCAAGGTCTTTATGGCCATTGCAAGCGAGACCGAGTTGGAAGACCTGTTAACTACCTACACCAAACTGAACAAGAACGCCAGTGTGTTCTTAGGAGGGAGACCGGAGAAGAGCTCTGAGGAGAGCGCCACCAAAGCGCCTCACGACACGGTCCTGTCTAGGAGAAAAGAAGGGGACAGCTCGAATCCCATTCCAGACGAGGAACGTATGAGGTCCACCGAGGACCTTAGTAGCACAGGCCCTACGGTGTCAGATCGACACGCACGATCGCTGACAGCTGTTTCTGCATATGGCGCCTCAGTGGCCCTCAACAAAACCCGGCAGCGGCCGGTGTCGGCCAAGGTAACAAGTTCACAAGGAACTGACAGGATGCACCGCGTTAGTCGCCCAGTATCGGCCAAGCCGTACTCGCGTGATATGATGAGAACAGTTGAAGACACCGGGGAAACCAGGAGCGCGGATGGAGGCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CHB8	Tubulin polyglutamylase TTLL5 OS=Mus musculus OX=10090 GN=Ttll5 PE=1 SV=3
Q5R978	Tubulin polyglutamylase TTLL5 OS=Pongo abelii OX=9601 GN=TTLL5 PE=2 SV=1
Q6EMB2	Tubulin polyglutamylase TTLL5 OS=Homo sapiens OX=9606 GN=TTLL5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12241 all species →	TUBULIN POLYGLUTAMYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan
GO:0070740 all species →	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16602	TTLL5; tubulin polyglutamylase TTLL5	EC:6.3.2.61	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.