Genomic Location: Ap13:32350967...32371425
NR annotation: XP_020607109.1, sodium channel protein 60E-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.3064 |
| Transcript |
| evm.model.Ap13.3064 |
| Protein |
| evm.model.Ap13.3064 |
| UniProt accession | Description |
|---|---|
| Q05973 | Sodium channel protein 1 brain OS=Heterololigo bleekeri OX=1423826 PE=2 SV=1 |
| Q20JQ7 | Sodium channel protein type 4 subunit alpha B OS=Danio rerio OX=7955 GN=scn4ab PE=2 SV=1 |
| Q2XVR4 | Sodium channel protein type 4 subunit alpha B OS=Tetraodon nigroviridis OX=99883 GN=scn4ab PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000452 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| IPR043203 all species → | Family | Voltage-gated cation channel calcium and sodium | Interproscan |
| IPR027359 all species → | Homologous_superfamily | Voltage-dependent channel domain superfamily | Interproscan |
| IPR001696 all species → | Family | Voltage gated sodium channel, alpha subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10037 all species → | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0001518 all species → | Cellular Component | voltage-gated sodium channel complex | Interproscan |
| GO:0005248 all species → | Molecular Function | voltage-gated sodium channel activity | Interproscan |
| GO:0005261 all species → | Molecular Function | monoatomic cation channel activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0019228 all species → | Biological Process | neuronal action potential | Interproscan |
| GO:0035725 all species → | Biological Process | sodium ion transmembrane transport | Interproscan |
| GO:0086010 all species → | Biological Process | membrane depolarization during action potential | Interproscan |
| GO:0006814 all species → | Biological Process | sodium ion transport | Interproscan |
evm.model.Ap13.3064.Transcript abundance of evm.model.Ap13.3064 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
