Detailed information of evm.model.Ap13.3090 in Astrangia poculata

Genomic Location: Ap13:32672462...32697768
NR annotation: XP_020603553.1, usherin-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75445Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
Q2QI47Usherin OS=Mus musculus OX=10090 GN=Ush2A PE=1 SV=2
Q8K3K1Usherin OS=Rattus norvegicus OX=10116 GN=Ush2a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002108 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan
PF00055
all species →		Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR008211
all species →		DomainLaminin, N-terminalInterproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005604
all species →		Cellular Componentbasement membraneInterproscan
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.3090.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP