Genomic Location: Ap13:33145836...33165379
NR annotation: KAJ7365391.1, Maguk P55 sub member [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.3147 |
| Transcript |
| evm.model.Ap13.3147 |
| Protein |
| evm.model.Ap13.3147 |
| UniProt accession | Description |
|---|---|
| Q8N3R9 | Protein PALS1 OS=Homo sapiens OX=9606 GN=PALS1 PE=1 SV=3 |
| E2QY99 | Protein PALS1 OS=Canis lupus familiaris OX=9615 GN=PALS1 PE=1 SV=1 |
| Q5RDQ2 | Protein PALS1 OS=Pongo abelii OX=9601 GN=PALS1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000787 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02828 all species → | L27 | L27 domain | Domain | Interproscan |
| PF07653 all species → | SH3_2 | Variant SH3 domain | Domain | Interproscan |
| PF00625 all species → | Guanylate_kin | Guanylate kinase | Domain | Interproscan |
| PF00307 all species → | CH | Calponin homology (CH) domain | Domain | Interproscan |
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014775 all species → | Domain | L27 domain, C-terminal | Interproscan |
| IPR008144 all species → | Domain | Guanylate kinase-like domain | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR035601 all species → | Domain | MPP5, SH3 domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR004172 all species → | Domain | L27 domain | Interproscan |
| IPR001715 all species → | Domain | Calponin homology domain | Interproscan |
| IPR008145 all species → | Domain | Guanylate kinase/L-type calcium channel beta subunit | Interproscan |
| IPR036872 all species → | Homologous_superfamily | CH domain superfamily | Interproscan |
| IPR050716 all species → | Family | Membrane-associated guanylate kinase | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR036892 all species → | Homologous_superfamily | L27 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23122 all species → | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005911 all species → | Cellular Component | cell-cell junction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06091 | MPP5, PALS1; MAGUK p55 subfamily member 5 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of evm.model.Ap13.3147 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
