Gene detail

Detailed information of evm.model.Ap13.318 in Astrangia poculata

Genomic Location: Ap13:3297455...3306397
NR annotation: XP_044165831.1, uncharacterized protein LOC114952264 [Acropora millepora]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.318

atgcattcttatcttcaaggagaactagctcgtaaatccgttgttgggccttttatttcggttcccttccgcaacggcatggctgtatctccgctgaacacggtgcccaagaaagatacttcggaacgccgggtcattctggacttaagttggccccctggtacatcggtgaatgacggaatcttgcctaatgtggtcgatggttcagagtttcaacttagttatcctacggtggacaacattgctgctctagtggttcagaaaggaccaggttgcctaatttacaagcgtgacttaaagagagcttaccggcaatttcgtgtagacccttatgactttcctttattgggttttaagtgggaagatcaatacttctttgacattgttttacctatgggactcaggtcagcagctatggcctgccagcggataacaaattcagtgtcttatatttgtgcacagcatggtttcgatgtccttaattatttagatgattttcagggggtcgagactcctgacaacgctgatcgtgccttccgttttacacagtcactgttacttgatctcggacttgtcgaatctcacgaaaaggcctgcccgccttctacgacgatgacatgcttaggagtgcaatttgatactgtgggcatgacgatatcagttaccccagaaagggtgcaggaactatcgcttcttcttgacacttggctacacaaaaagagcaccaccaagcgggagcttcaatctcttttgggaaagctctcatttgtttcgaaatgtgttcgacaaagcagaatttttcttatgcgcttgcttgatcttctccggtccgtgaagcgaaatcatcatcacgtgaacgttactagcgagtgccgcaaagatctcaagtggtggaaagagttccttccacagtttaatggcgtctccatcatttatacgtcatgttggtcttctcccgacgaggtcttcgccacagacgcttgtctcacgggttgcggcgggtgcagtggtagcaggatttttcacaaggagtttcccgctgatgttcttgttcggttcccgtttatccaccagctggaatgtttagcgatcttagtggccgtacgcttgtggggctcagcttggaagggcctgcgcctcactgtattttgcgataatgaagccgtggttcaagtgctaaattctgaacaagaactccttcaacttgaacgcgacctccaagtctccaggcaagcagcatactcatctggcacgaacaagaatcatcgtacgcagtggaggaactatttaacgttttgcttgtactttaagtttcaacctgttcctgcgactgctcgagtcattagtttatattgccagtttttaagtcgctcccttactcctcagtctattagaaattacattagtgggattgcaaaagcttacaggaaaaaggccctgaaatgtcatcctgataaaaacccagacaatcaagaagcagtggatctattccatgagctgtccaaggcattagaggtgctaagtgatccaaaagcaaaggcagcttatgatgctgtactgaaggctaaggaacgagcaagactacgtacgcaggctttagatgcaaagagaaagaaattcaaacaagatcttgaacaaagagaggatgcagcgaaaactgaaaaggaaagtgatgaaatggctgccaagaatttacaagctgagattgagaggctacgagaggaaggatcaaagcttctaaaggaacaacaagaattccttaaaacccagttaagaaaagaaatggaaacagaacaggataagaccagctttgaagacgtcactccaaaattaaaggtgagatggaagagcaagaaatctgacattacaaatggtggatactcacaggaaatgctccaatcattctttgaaaagtatggcgaagtgagctatgtcatcgtatcggccaagaagaaaggaagcgctgtagtagaattcatatcagcggccagtgccaaacttgcattggagaatgagcgtggcatacctgataaccctctaaaaatatcctggttggatggtgtgtcatcttcaactgatgcaaacacagaaacagtcttagatgctacaaattcaaccagaaacatcagtggtgaagctgcagctgagtccaagctttcagagccatcttattcaacggaaagtaccgtatctgacaaagattatgaaagtgttgtgttgatgaaacttcgccagtttgaggaaaggaaacggttgattaaagcaatgcaagaggaagatgagcagtaa

Transcript

evm.model.Ap13.318

ATGCATTCTTATCTTCAAGGAGAACTAGCTCGTAAATCCGTTGTTGGGCCTTTTATTTCGGTTCCCTTCCGCAACGGCATGGCTGTATCTCCGCTGAACACGGTGCCCAAGAAAGATACTTCGGAACGCCGGGTCATTCTGGACTTAAGTTGGCCCCCTGGTACATCGGTGAATGACGGAATCTTGCCTAATGTGGTCGATGGTTCAGAGTTTCAACTTAGTTATCCTACGGTGGACAACATTGCTGCTCTAGTGGTTCAGAAAGGACCAGGTTGCCTAATTTACAAGCGTGACTTAAAGAGAGCTTACCGGCAATTTCGTGTAGACCCTTATGACTTTCCTTTATTGGGTTTTAAGTGGGAAGATCAATACTTCTTTGACATTGTTTTACCTATGGGACTCAGGTCAGCAGCTATGGCCTGCCAGCGGATAACAAATTCAGTGTCTTATATTTGTGCACAGCATGGTTTCGATGTCCTTAATTATTTAGATGATTTTCAGGGGGTCGAGACTCCTGACAACGCTGATCGTGCCTTCCGTTTTACACAGTCACTGTTACTTGATCTCGGACTTGTCGAATCTCACGAAAAGGCCTGCCCGCCTTCTACGACGATGACATGCTTAGGAGTGCAATTTGATACTGTGGGCATGACGATATCAGTTACCCCAGAAAGGGTGCAGGAACTATCGCTTCTTCTTGACACTTGGCTACACAAAAAGAGCACCACCAAGCGGGAGCTTCAATCTCTTTTGGGAAAGCTCTCATTTGTTTCGAAATGTGTTCGACAAAGCAGAATTTTTCTTATGCGCTTGCTTGATCTTCTCCGGTCCGTGAAGCGAAATCATCATCACGTGAACGTTACTAGCGAGTGCCGCAAAGATCTCAAGTGGTGGAAAGAGTTCCTTCCACAGTTTAATGGCGTCTCCATCATTTATACGTCATGTTGGTCTTCTCCCGACGAGGTCTTCGCCACAGACGCTTGTCTCACGGGTTGCGGCGGGTGCAGTGGTAGCAGGATTTTTCACAAGGAGTTTCCCGCTGATGTTCTTGTTCGGTTCCCGTTTATCCACCAGCTGGAATGTTTAGCGATCTTAGTGGCCGTACGCTTGTGGGGCTCAGCTTGGAAGGGCCTGCGCCTCACTGTATTTTGCGATAATGAAGCCGTGGTTCAAGTGCTAAATTCTGAACAAGAACTCCTTCAACTTGAACGCGACCTCCAAGTCTCCAGGCAAGCAGCATACTCATCTGGCACGAACAAGAATCATCGTACGCAGTGGAGGAACTATTTAACGTTTTGCTTGTACTTTAAGTTTCAACCTGTTCCTGCGACTGCTCGAGTCATTAGTTTATATTGCCAGTTTTTAAGTCGCTCCCTTACTCCTCAGTCTATTAGAAATTACATTAGTGGGATTGCAAAAGCTTACAGGAAAAAGGCCCTGAAATGTCATCCTGATAAAAACCCAGACAATCAAGAAGCAGTGGATCTATTCCATGAGCTGTCCAAGGCATTAGAGGTGCTAAGTGATCCAAAAGCAAAGGCAGCTTATGATGCTGTACTGAAGGCTAAGGAACGAGCAAGACTACGTACGCAGGCTTTAGATGCAAAGAGAAAGAAATTCAAACAAGATCTTGAACAAAGAGAGGATGCAGCGAAAACTGAAAAGGAAAGTGATGAAATGGCTGCCAAGAATTTACAAGCTGAGATTGAGAGGCTACGAGAGGAAGGATCAAAGCTTCTAAAGGAACAACAAGAATTCCTTAAAACCCAGTTAAGAAAAGAAATGGAAACAGAACAGGATAAGACCAGCTTTGAAGACGTCACTCCAAAATTAAAGGTGAGATGGAAGAGCAAGAAATCTGACATTACAAATGGTGGATACTCACAGGAAATGCTCCAATCATTCTTTGAAAAGTATGGCGAAGTGAGCTATGTCATCGTATCGGCCAAGAAGAAAGGAAGCGCTGTAGTAGAATTCATATCAGCGGCCAGTGCCAAACTTGCATTGGAGAATGAGCGTGGCATACCTGATAACCCTCTAAAAATATCCTGGTTGGATGGTGTGTCATCTTCAACTGATGCAAACACAGAAACAGTCTTAGATGCTACAAATTCAACCAGAAACATCAGTGGTGAAGCTGCAGCTGAGTCCAAGCTTTCAGAGCCATCTTATTCAACGGAAAGTACCGTATCTGACAAAGATTATGAAAGTGTTGTGTTGATGAAACTTCGCCAGTTTGAGGAAAGGAAACGGTTGATTAAAGCAATGCAAGAGGAAGATGAGCAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KI83	DnaJ homolog subfamily C member 17 OS=Bos taurus OX=9913 GN=DNAJC17 PE=2 SV=1
Q9NVM6	DnaJ homolog subfamily C member 17 OS=Homo sapiens OX=9606 GN=DNAJC17 PE=1 SV=1
D3ZSC8	DnaJ homolog subfamily C member 17 OS=Rattus norvegicus OX=10116 GN=Dnajc17 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR052094 all species →	Family	Pre-mRNA-splicing and ERAD-associated protein	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034254 all species →	Domain	DNAJC17, RNA recognition motif	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44313 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.318.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.