Detailed information of evm.model.Ap13.430.1.5f15dcd6 in Astrangia poculata

Genomic Location: Ap13:4499314...4512247
NR annotation: XP_022788082.1, putative ATP-dependent RNA helicase DHX57 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P158Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens OX=9606 GN=DHX57 PE=1 SV=2
Q6P5D3Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2
D4A2Z8ATP-dependent DNA/RNA helicase DHX36 OS=Rattus norvegicus OX=10116 GN=Dhx36 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000674 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04408
all species →		HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF21010
all species →		HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR048333
all species →		DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007502
all species →		DomainHelicase-associated domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →		ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan
GO:0005622
all species →		Cellular Componentintracellular anatomical structureInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.430.1.5f15dcd6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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