Gene detail

Detailed information of evm.model.Ap13.44 in Astrangia poculata

Genomic Location: Ap13:407086...419106
NR annotation: XP_020618321.1, arginase-1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95KM0	Arginase-1 OS=Oryctolagus cuniculus OX=9986 GN=ARG1 PE=2 SV=2
P05089	Arginase-1 OS=Homo sapiens OX=9606 GN=ARG1 PE=1 SV=2
Q2KJ64	Arginase-1 OS=Bos taurus OX=9913 GN=ARG1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00491 all species →	Arginase	Arginase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006035 all species →	Family	Ureohydrolase	Interproscan
IPR020855 all species →	Binding_site	Ureohydrolase, manganese-binding site	Interproscan
IPR014033 all species →	Family	Arginase	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43782 all species →	ARGINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016813 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	Interproscan
GO:0004053 all species →	Molecular Function	arginase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019547 all species →	Biological Process	arginine catabolic process to ornithine	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0006525 all species →	Biological Process	arginine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01476	rocF, arg; arginase	EC:3.5.3.1	Amoebiasis	ko05146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.