Gene detail

Detailed information of evm.model.Ap13.459 in Astrangia poculata

Genomic Location: Ap13:4810316...4828340
NR annotation: CAH3043472.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.459

atgcgaatcgtaaatttgaccgaagagtttcacccttgcctggacgaagttgatttggccggcgatgaacattggatcagagatttccttcagcaaaggcagtcagtgaaaaatcgaacgaaaactgtccttgtagttttggattcagcgaaagagacgttatctgtatttgaaagcgtacttgttcagtactttgacagtggaaactatggatttgtaaagttcttgggcttgaatgatcgttatcgagagggcaacgaatgcagactgcagctgataaacgaggctatcactgtcataaacaagtatgctcagcaaagtggttatcataatggcgatgaaattttcagcatggtcaacaaaaagcctaaatcttcaagtatggcgagcaatcgattatggtctgaacactgcaagtgtctgtatgtggcaggatttcgccaaatagaaactgacagcttttcgtctaatatttcaactgaaagtcgtgtacttgtttacaagcctcatttagtgcccaacttccaagttgaagatggtgttgttggggatcacataagcacatctgatctgctaaacttttgtgaggatctcatcaactctatggattcatcttatgatggaaagcaagctgcggaacaaatcaaagcccacatgaacatttttaaagagagttcaaggctgatgtcgaacatggtgaaatcttcttacccttggaatggaagagcaggaccctgtccagataatcaagtggctattgttggtgcaggattagcaggtctggctgctgctgcctctctttccaaggctgggtttgatgttgtacttttggaagctgccaactatctaggtggtagagtgaagcaagttcagccattcaaaggtttccctccatttgatcttggaggagaatttattcatggatccaacactgtggttaataagattgcccatgataatggctgggttgttctaccggaatctcaatgtaaagacgaagaagaaggcgaaaaaatctactttaaaggaaaactctactcattatccagtgatcaacaagaaatcaaatcagccagagaagcatggactgaaataatcaacagcaaatacagacatcaagatagtgaacctagatcagtgtcagattccctgaaggtcaggcttgaagagaaaggtttgtcacgtgatgtcttggatgtggttgattggtggaaaatgaagatatctgctggctccttggagcattatggagtgcgtgagggaagacggagaatggaatccaaatatgaatgggggctgggaaacttcagactcgcagaatcttattcccagctggtgaagtactacttggataacattatagatgtggataagcgtctgaactggcaagttaaggaagttgtttggaaaggtgaaggcagaagcaagtcaagccctggtggaagaatcctactgaaaaaccaacatggcgaagtgctaaccgctaagtatgttatcatcactgtcccgttaacagtcctcaaagacggcgacataacctttgtaccggctcttcctgccagcaagaacgcagccatagacacgatccagatgcttggagcgtggaaaatcgtgtgtcgctttaaacatcgcttctggcccgagacgcttcatcagatttacagtgtgcgagggtttgttagtgagatatggacttgcacacgtgactcgcctgacagtgacgagaaatgtcacgtgatagtcgggttcgaaactgctgagcctgcggacgagaagagtgttctcagcggacaagaggttttaaagggattcttgagccatttggatgagatgttcggcacagccgctgacccacatcccgccaccaactcgttcatggattatgtgtacttccattggtccaaccatcccttcattcgcggaggatacagctcgcctactgctcatgcgtacgactctcgtcacgtgctcgccagccctgtagaagatcgcctgttctttgctggtgaagctactagtctgcggtcatgttcaactgtgccgactgctatagaaacgggaactcgcgtggcagatgaagcgatttatgggtgcacaacacgttgcaagcagatcaacatattcctactgaaaccattctgccagcagtatgcatttcaacatggagcttcccattcaagatttggcgtgtgttctgatactgtttgttatcctgtgttacgtgatcaaaatgtacagagccccattgaattgggagccaaaagtggggaaacaactgcctgtagaagccaggagacgaaacaaccgaagaagaacagcaaacctgagaaatctgcacaatcacaaccgctatccaacggaacacgacgaacggcacggctgaacaagtgggagtatgcattgcagcatggaggttcccatacaagatttggcgtgtgttatacttgttattatactgtttgtgatcctgtgttacgtgatcaaaatgtacagagctctaatgaattgggagccgagagtgggaaaacaacaacctgcagtagacaggagactaaactaccggaggagaacaaacttgagaaacccgcacaatcacaatccgcaccaaccaacggaacacgacgaacgacaaggctgaacaagaagggcgaggaaaaaggtgttttatgggtactcaaaatggaagctttgtttatcagttctgagatgagaggagagaacattgtattctggagtctggcggattcactggatattgtgggagtttag

Transcript

evm.model.Ap13.459

ATGCGAATCGTAAATTTGACCGAAGAGTTTCACCCTTGCCTGGACGAAGTTGATTTGGCCGGCGATGAACATTGGATCAGAGATTTCCTTCAGCAAAGGCAGTCAGTGAAAAATCGAACGAAAACTGTCCTTGTAGTTTTGGATTCAGCGAAAGAGACGTTATCTGTATTTGAAAGCGTACTTGTTCAGTACTTTGACAGTGGAAACTATGGATTTGTAAAGTTCTTGGGCTTGAATGATCGTTATCGAGAGGGCAACGAATGCAGACTGCAGCTGATAAACGAGGCTATCACTGTCATAAACAAGTATGCTCAGCAAAGTGGTTATCATAATGGCGATGAAATTTTCAGCATGGTCAACAAAAAGCCTAAATCTTCAAGTATGGCGAGCAATCGATTATGGTCTGAACACTGCAAGTGTCTGTATGTGGCAGGATTTCGCCAAATAGAAACTGACAGCTTTTCGTCTAATATTTCAACTGAAAGTCGTGTACTTGTTTACAAGCCTCATTTAGTGCCCAACTTCCAAGTTGAAGATGGTGTTGTTGGGGATCACATAAGCACATCTGATCTGCTAAACTTTTGTGAGGATCTCATCAACTCTATGGATTCATCTTATGATGGAAAGCAAGCTGCGGAACAAATCAAAGCCCACATGAACATTTTTAAAGAGAGTTCAAGGCTGATGTCGAACATGGTGAAATCTTCTTACCCTTGGAATGGAAGAGCAGGACCCTGTCCAGATAATCAAGTGGCTATTGTTGGTGCAGGATTAGCAGGTCTGGCTGCTGCTGCCTCTCTTTCCAAGGCTGGGTTTGATGTTGTACTTTTGGAAGCTGCCAACTATCTAGGTGGTAGAGTGAAGCAAGTTCAGCCATTCAAAGGTTTCCCTCCATTTGATCTTGGAGGAGAATTTATTCATGGATCCAACACTGTGGTTAATAAGATTGCCCATGATAATGGCTGGGTTGTTCTACCGGAATCTCAATGTAAAGACGAAGAAGAAGGCGAAAAAATCTACTTTAAAGGAAAACTCTACTCATTATCCAGTGATCAACAAGAAATCAAATCAGCCAGAGAAGCATGGACTGAAATAATCAACAGCAAATACAGACATCAAGATAGTGAACCTAGATCAGTGTCAGATTCCCTGAAGGTCAGGCTTGAAGAGAAAGGTTTGTCACGTGATGTCTTGGATGTGGTTGATTGGTGGAAAATGAAGATATCTGCTGGCTCCTTGGAGCATTATGGAGTGCGTGAGGGAAGACGGAGAATGGAATCCAAATATGAATGGGGGCTGGGAAACTTCAGACTCGCAGAATCTTATTCCCAGCTGGTGAAGTACTACTTGGATAACATTATAGATGTGGATAAGCGTCTGAACTGGCAAGTTAAGGAAGTTGTTTGGAAAGGTGAAGGCAGAAGCAAGTCAAGCCCTGGTGGAAGAATCCTACTGAAAAACCAACATGGCGAAGTGCTAACCGCTAAGTATGTTATCATCACTGTCCCGTTAACAGTCCTCAAAGACGGCGACATAACCTTTGTACCGGCTCTTCCTGCCAGCAAGAACGCAGCCATAGACACGATCCAGATGCTTGGAGCGTGGAAAATCGTGTGTCGCTTTAAACATCGCTTCTGGCCCGAGACGCTTCATCAGATTTACAGTGTGCGAGGGTTTGTTAGTGAGATATGGACTTGCACACGTGACTCGCCTGACAGTGACGAGAAATGTCACGTGATAGTCGGGTTCGAAACTGCTGAGCCTGCGGACGAGAAGAGTGTTCTCAGCGGACAAGAGGTTTTAAAGGGATTCTTGAGCCATTTGGATGAGATGTTCGGCACAGCCGCTGACCCACATCCCGCCACCAACTCGTTCATGGATTATGTGTACTTCCATTGGTCCAACCATCCCTTCATTCGCGGAGGATACAGCTCGCCTACTGCTCATGCGTACGACTCTCGTCACGTGCTCGCCAGCCCTGTAGAAGATCGCCTGTTCTTTGCTGGTGAAGCTACTAGTCTGCGGTCATGTTCAACTGTGCCGACTGCTATAGAAACGGGAACTCGCGTGGCAGATGAAGCGATTTATGGGTGCACAACACGTTGCAAGCAGATCAACATATTCCTACTGAAACCATTCTGCCAGCAGTATGCATTTCAACATGGAGCTTCCCATTCAAGATTTGGCGTGTGTTCTGATACTGTTTGTTATCCTGTGTTACGTGATCAAAATGTACAGAGCCCCATTGAATTGGGAGCCAAAAGTGGGGAAACAACTGCCTGTAGAAGCCAGGAGACGAAACAACCGAAGAAGAACAGCAAACCTGAGAAATCTGCACAATCACAACCGCTATCCAACGGAACACGACGAACGGCACGGCTGAACAAGTGGGAGTATGCATTGCAGCATGGAGGTTCCCATACAAGATTTGGCGTGTGTTATACTTGTTATTATACTGTTTGTGATCCTGTGTTACGTGATCAAAATGTACAGAGCTCTAATGAATTGGGAGCCGAGAGTGGGAAAACAACAACCTGCAGTAGACAGGAGACTAAACTACCGGAGGAGAACAAACTTGAGAAACCCGCACAATCACAATCCGCACCAACCAACGGAACACGACGAACGACAAGGCTGAACAAGAAGGGCGAGGAAAAAGGTGTTTTATGGGTACTCAAAATGGAAGCTTTGTTTATCAGTTCTGAGATGAGAGGAGAGAACATTGTATTCTGGAGTCTGGCGGATTCACTGGATATTGTGGGAGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6Z690	Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0755200 PE=2 SV=1
Q6YYZ1	Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0143400 PE=2 SV=1
Q01H90	Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica OX=39946 GN=B0103C08-B0602B01.13 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002168 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF13450 all species →	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.459.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.