Detailed information of evm.model.Ap13.520 in Astrangia poculata

Genomic Location: Ap13:5348653...5354863
NR annotation: KAJ7357811.1, DNA-directed RNA polymerase II subunit RPB7 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5E9B8DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1
P62487DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1
P62488DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus OX=10090 GN=Polr2g PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008547 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575
all species →		S1S1 RNA binding domainDomainInterproscan
PF02733
all species →		Dak1Dak1 domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004006
all species →		DomainDhaK domainInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050861
all species →		FamilyDihydroxyacetone Kinase (DAK)Interproscan
IPR003029
all species →		DomainS1 domainInterproscan
IPR036898
all species →		Homologous_superfamilyRNA polymerase Rpb7-like, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28629
all species →		TRIOKINASE/FMN CYCLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004371
all species →		Molecular Functionglycerone kinase activityInterproscan
GO:0006071
all species →		Biological Processglycerol metabolic processInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0019563
all species →		Biological Processglycerol catabolic processInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.520.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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