Gene detail

Detailed information of evm.model.Ap13.638_evm.model.Ap13.636 in Astrangia poculata

Genomic Location: Ap13:6488527...6538232
NR annotation: XP_020618826.1, LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.638_evm.model.Ap13.636

atggaggaaaggaaaagggctaaggagttttcctttcagtggccacattatgcagtggacttggttgaaagagcaacggaggtcgatggcgcgagtgttatttgttttgcaagaaaggagtccaagatctttatagcgtttaaggtgttccaagagttttggagaaggaatctgaaaactggaaaaatgattctcttggtagatgacgagaaagccaaaattgtaaagtccttcatgagtggaacactgaaccaaagtatgttgtctgtgaaaacttgttttgatgcgacagatgtcacaaatgaaggacagcattgtgatataatgattatgacaggaaaggttttcctgcagattttaaagactggaataatggatttaacattcttcagtttaattgtttttgatgaatgtcatcttgctattaacaaggagcatccatttgcaatcatattaaagcaagtagcgggatgtgaacatgatttaaggccacaaatagttggtctttcagcaacgattcttctccatcaagctttcccacaagatatggaaaccttccttagctccttggaagagttatttcactgcaaagcacttatttcaaatgaccttctggccacgaacagatatggagaacaagccgatgaagaaatcaagttttacacttgtgaccagcctcaggatgaactcgtctgtaaacttaatgaaatccttgaaagtgccattttatttctaaaagactacagagtgtgtgacgaaacacagacttgtgtgaggtttgtcaaacacattttgactgagatccataaagttcttttatggttaggacaatggtgcactgcttctattgcgagaattgttataagagaaaccaacaagctcgaaaagaagtgcaatgaagacagcaatctgctcctgttgcagtattgcagaacacagatgaatttaattatcaacatgtcagggcaagagaaattggaaggtcctgaaaatagccttactaatctgacaagaaaactgctttttcacatggccacgcatttaaagcttgaagatcaagagttggatactcatcagacaaccctcccaagtgctgatcaaccttgtcaagttccatctcaatctgcaaacttaaaaacttcatatggtactaacagccaatgcgacgaccctttgtgcgtagtgcttgtccctagcacaatcattgccaaggcactgaactcgctcattaacaagctgtcgaaaaccatgccagagtacagcttctttaaaagtgcatgtgttcatggtgacaaagcaaaacaaggaacagccgagcaaagtctatctagtgaaatggaggaggacaatgttatggagtgtgtacaggacggctcggtaaatgttcttgttgcaacattcgaaattgagcaagagttgtatgcacggagatgcagtcttataatacgtctgggcatgccgaaggtttatgagaattatttcagattaaaaagtaaacttaagtgtgctggagcgaagctggtttttcttgtgaaagaagaagaaataggcaagactgaagagaattacaaggttttccagatgatagagaggctcttgaaggaaaggtgtcccaacagccggccaccaggccatgaaataaagaaactgtttgaagatgatttactggatgtttatgaacctcatggggaagacggccctagagttgatcttctctctagcatttctcttcttaacagttattgctccaagtatcccagtagtggtgttggtgcaccagttcttgtctgtagaagaaaggaattgtggtctgatgatgaagtagagtttgtatctgtactctacctgcctcgcaactctccaatttaccaacctatcacgggtagtgtaacactgaagagaaatgaagttaacgagaagacagcaagaaaagctggaatcaagtctgagatgcttgctgcccttgaggcttgtcagcttttacacgaaaaactagagctgagtgacgagcttcagccagtgttcagattcagggttccccgtctgacggcagaaggtgaagtgtgtgaatgtgaggttgctgacagtggtgttggaatggatggctcagtcaagagaaacagagcatacaagagaaagtttccttcaatattggaaaacaattttccagtttgtggcgaaccaagctatgtgtatcgtgtcagcatggagctgaccaaaccatggacgtttcaacgggctgtcaggtcacagagtaaagttcaatctacgtcagctactcattatcttgggattctctccagaaagccactacctaagctgcctggcgtgttgatatttgacagagctggagaggtcactgcaatggtgacagagtgcagtgcacatcctgttgtccttactactgatcaagagtcactcctgcagagattcactgggtatgtcttcagggagattgcaaaaccaaagaaacatgactcagctacttttccgtcatttgacccatccattgccacttctgggtattacatttcacttctaagtgatgcccctggtagctgttcctctcagttaaacgcaacactgcaacgcaaggaaattgcattcgatttcatgcactccattgaggatgcacttggcagcttcgacaatcccactgacccaccccctcctggtgttaaagacccagagattttcagggatgcagtagtgacagccatttaccaagataaaaacactcattattacgtggctgacatctgctatgaccgtagccccgcagatccgtttccaaactctgatctagccagtacttttgccgagtactatcaaaagcgatacgaagtcgaggtatcgttggatcaacccatgctggatgtcgatcacacatcttctcgactcaacttcctgacgccccgctatcaaaacatcaaaggccaacatctttctgtacccgagaaagattccaagaggtcgcagaagtccatggtctttgtaattcctgagctgtgctccattcatccggtgccaggatatctgtggaggcagcttttcaatttgccagctgtgctgtaccgcatggagtcacttctagttgctgaggagcttaggtcccatattgcctgtgttcttgacatgggagctgttgattggccaagtgatgttccgctgccattgttgacaatgggtgaaatggttggagaggagattgtgcataaaccgtattctgccgcagaggaatcaattgacaagtcttcttctaagatggctacagagaagctcaccagtctgcactgcgcagagctgtctgaagcgttaacagatctacgaatttccggacagaatgagcacaatgagatgcaacctgcagatagcttgcccttacaagatgctaatgctcatgccactactcattcttcgccaaagatcgttagtgatgaaacatgttttgaaggttcttgcactgaagctaagagggaagtttctcataactttagcggagcgaaggtggattctttacagagggagctctttgacagaaattcctctgttcctttagaccaaggagcattgcctggtgacaacagtaaaactgcgcttgagttggaaagtgaattgtctcccatcacaatttggactgacccgcttatctccagcttataccaaacctgtggtccaccatcaaccttgattcttcgcgctctcaccacaggtatcactggagacgtgttttccctggagcgacttgagatcctaggtgattcattcttgaagtatgccatcacctcttcaatcttcttccagtacaggtacgagaatgagggcaagctgtctttcatgcggggtctcaaagtgagcaaccgacagttgttttaccttgcacggcagcaaggcctgccttcttatgtgattacccgcatgttcagccctctggtcaactggctgcctcctggattctattacaatgatggtggtgacactgaaggatcgggagaaggaaatcttcttttgatgtcagagaaaagccctcaagagtttgaggacgacgaagaagatggaagtatttttgcagaggaaggactttcaggtcctagtgagggtccttgtagtcaaggcccctctggtaagggtcactcatctgatatccagctgaggcacaacttgcatctttgttgttcggacaaggccgttgccgatgccactgaggcccttgttggtgcatacctgttgtgtcttggcccagaaggagccttcgagtttctgaaatggttgggcgtggaactcacaaaacaagaagaaactcaagatgactatgacgctagtaggtcttctgctaaggattccgcttttggtgcagatgacttggaatcagactcaaccatgaacagtcaggacgatttaaaagtgccttttcaagcttgtcaaacatttgatagaatcttctccccgtcgggagagatagcttccattactgagttcttatcaagccaaaggtctacagctgccgagttcaagacactagaggaggctctcaactaccgctttcgtgacaggtctttgctagtgcaagccttcacacacacctccctgccacgtgactacaactctgtacgaagcagctatgaacaactggagttcttgggagatgctctcttggattttcttgtgacgcgtcatttgtacttacaccacagacacatgccccctggcgagctaactgacctgcgatcggctgtggtgaacaactacagttttgctgctctggcggtccaactgggttttcccaaacacctgcgatcaatgtcgccacagctgttcagcatggtgaacaagtttacagtgaagctaaaggaaaaagagatgagacagcaacaagtcgagagtgaagagatttactccagtgtttttctcataagaagcgaggatgacgaggaaggcgcgcaggtggaggtacccaaggcattaggtgatctgtttgaggcagtcgctggcgcattgtacgtggactgtggtcaagacttggatagggtgtggcaagtgtacctacctatcctcaagccctctattgattactactctgcccacccccctatgtcagcgatacgaaggttgttggagatgatgccaaatgctgccaagttttcgccagtggagagaatggtggatggtaaattcaaatctactctgacggtggcagggtttggaaaattcgtcgccacaggaagaaatttccgaattgcaaagtcaagtgctgcgcaaaaggccctgaatgttatccaaaagaaaaagtctgagacgaaagttgatagctcgtaa

Transcript

evm.model.Ap13.638_evm.model.Ap13.636

ATGGAGGAAAGGAAAAGGGCTAAGGAGTTTTCCTTTCAGTGGCCACATTATGCAGTGGACTTGGTTGAAAGAGCAACGGAGGTCGATGGCGCGAGTGTTATTTGTTTTGCAAGAAAGGAGTCCAAGATCTTTATAGCGTTTAAGGTGTTCCAAGAGTTTTGGAGAAGGAATCTGAAAACTGGAAAAATGATTCTCTTGGTAGATGACGAGAAAGCCAAAATTGTAAAGTCCTTCATGAGTGGAACACTGAACCAAAGTATGTTGTCTGTGAAAACTTGTTTTGATGCGACAGATGTCACAAATGAAGGACAGCATTGTGATATAATGATTATGACAGGAAAGGTTTTCCTGCAGATTTTAAAGACTGGAATAATGGATTTAACATTCTTCAGTTTAATTGTTTTTGATGAATGTCATCTTGCTATTAACAAGGAGCATCCATTTGCAATCATATTAAAGCAAGTAGCGGGATGTGAACATGATTTAAGGCCACAAATAGTTGGTCTTTCAGCAACGATTCTTCTCCATCAAGCTTTCCCACAAGATATGGAAACCTTCCTTAGCTCCTTGGAAGAGTTATTTCACTGCAAAGCACTTATTTCAAATGACCTTCTGGCCACGAACAGATATGGAGAACAAGCCGATGAAGAAATCAAGTTTTACACTTGTGACCAGCCTCAGGATGAACTCGTCTGTAAACTTAATGAAATCCTTGAAAGTGCCATTTTATTTCTAAAAGACTACAGAGTGTGTGACGAAACACAGACTTGTGTGAGGTTTGTCAAACACATTTTGACTGAGATCCATAAAGTTCTTTTATGGTTAGGACAATGGTGCACTGCTTCTATTGCGAGAATTGTTATAAGAGAAACCAACAAGCTCGAAAAGAAGTGCAATGAAGACAGCAATCTGCTCCTGTTGCAGTATTGCAGAACACAGATGAATTTAATTATCAACATGTCAGGGCAAGAGAAATTGGAAGGTCCTGAAAATAGCCTTACTAATCTGACAAGAAAACTGCTTTTTCACATGGCCACGCATTTAAAGCTTGAAGATCAAGAGTTGGATACTCATCAGACAACCCTCCCAAGTGCTGATCAACCTTGTCAAGTTCCATCTCAATCTGCAAACTTAAAAACTTCATATGGTACTAACAGCCAATGCGACGACCCTTTGTGCGTAGTGCTTGTCCCTAGCACAATCATTGCCAAGGCACTGAACTCGCTCATTAACAAGCTGTCGAAAACCATGCCAGAGTACAGCTTCTTTAAAAGTGCATGTGTTCATGGTGACAAAGCAAAACAAGGAACAGCCGAGCAAAGTCTATCTAGTGAAATGGAGGAGGACAATGTTATGGAGTGTGTACAGGACGGCTCGGTAAATGTTCTTGTTGCAACATTCGAAATTGAGCAAGAGTTGTATGCACGGAGATGCAGTCTTATAATACGTCTGGGCATGCCGAAGGTTTATGAGAATTATTTCAGATTAAAAAGTAAACTTAAGTGTGCTGGAGCGAAGCTGGTTTTTCTTGTGAAAGAAGAAGAAATAGGCAAGACTGAAGAGAATTACAAGGTTTTCCAGATGATAGAGAGGCTCTTGAAGGAAAGGTGTCCCAACAGCCGGCCACCAGGCCATGAAATAAAGAAACTGTTTGAAGATGATTTACTGGATGTTTATGAACCTCATGGGGAAGACGGCCCTAGAGTTGATCTTCTCTCTAGCATTTCTCTTCTTAACAGTTATTGCTCCAAGTATCCCAGTAGTGGTGTTGGTGCACCAGTTCTTGTCTGTAGAAGAAAGGAATTGTGGTCTGATGATGAAGTAGAGTTTGTATCTGTACTCTACCTGCCTCGCAACTCTCCAATTTACCAACCTATCACGGGTAGTGTAACACTGAAGAGAAATGAAGTTAACGAGAAGACAGCAAGAAAAGCTGGAATCAAGTCTGAGATGCTTGCTGCCCTTGAGGCTTGTCAGCTTTTACACGAAAAACTAGAGCTGAGTGACGAGCTTCAGCCAGTGTTCAGATTCAGGGTTCCCCGTCTGACGGCAGAAGGTGAAGTGTGTGAATGTGAGGTTGCTGACAGTGGTGTTGGAATGGATGGCTCAGTCAAGAGAAACAGAGCATACAAGAGAAAGTTTCCTTCAATATTGGAAAACAATTTTCCAGTTTGTGGCGAACCAAGCTATGTGTATCGTGTCAGCATGGAGCTGACCAAACCATGGACGTTTCAACGGGCTGTCAGGTCACAGAGTAAAGTTCAATCTACGTCAGCTACTCATTATCTTGGGATTCTCTCCAGAAAGCCACTACCTAAGCTGCCTGGCGTGTTGATATTTGACAGAGCTGGAGAGGTCACTGCAATGGTGACAGAGTGCAGTGCACATCCTGTTGTCCTTACTACTGATCAAGAGTCACTCCTGCAGAGATTCACTGGGTATGTCTTCAGGGAGATTGCAAAACCAAAGAAACATGACTCAGCTACTTTTCCGTCATTTGACCCATCCATTGCCACTTCTGGGTATTACATTTCACTTCTAAGTGATGCCCCTGGTAGCTGTTCCTCTCAGTTAAACGCAACACTGCAACGCAAGGAAATTGCATTCGATTTCATGCACTCCATTGAGGATGCACTTGGCAGCTTCGACAATCCCACTGACCCACCCCCTCCTGGTGTTAAAGACCCAGAGATTTTCAGGGATGCAGTAGTGACAGCCATTTACCAAGATAAAAACACTCATTATTACGTGGCTGACATCTGCTATGACCGTAGCCCCGCAGATCCGTTTCCAAACTCTGATCTAGCCAGTACTTTTGCCGAGTACTATCAAAAGCGATACGAAGTCGAGGTATCGTTGGATCAACCCATGCTGGATGTCGATCACACATCTTCTCGACTCAACTTCCTGACGCCCCGCTATCAAAACATCAAAGGCCAACATCTTTCTGTACCCGAGAAAGATTCCAAGAGGTCGCAGAAGTCCATGGTCTTTGTAATTCCTGAGCTGTGCTCCATTCATCCGGTGCCAGGATATCTGTGGAGGCAGCTTTTCAATTTGCCAGCTGTGCTGTACCGCATGGAGTCACTTCTAGTTGCTGAGGAGCTTAGGTCCCATATTGCCTGTGTTCTTGACATGGGAGCTGTTGATTGGCCAAGTGATGTTCCGCTGCCATTGTTGACAATGGGTGAAATGGTTGGAGAGGAGATTGTGCATAAACCGTATTCTGCCGCAGAGGAATCAATTGACAAGTCTTCTTCTAAGATGGCTACAGAGAAGCTCACCAGTCTGCACTGCGCAGAGCTGTCTGAAGCGTTAACAGATCTACGAATTTCCGGACAGAATGAGCACAATGAGATGCAACCTGCAGATAGCTTGCCCTTACAAGATGCTAATGCTCATGCCACTACTCATTCTTCGCCAAAGATCGTTAGTGATGAAACATGTTTTGAAGGTTCTTGCACTGAAGCTAAGAGGGAAGTTTCTCATAACTTTAGCGGAGCGAAGGTGGATTCTTTACAGAGGGAGCTCTTTGACAGAAATTCCTCTGTTCCTTTAGACCAAGGAGCATTGCCTGGTGACAACAGTAAAACTGCGCTTGAGTTGGAAAGTGAATTGTCTCCCATCACAATTTGGACTGACCCGCTTATCTCCAGCTTATACCAAACCTGTGGTCCACCATCAACCTTGATTCTTCGCGCTCTCACCACAGGTATCACTGGAGACGTGTTTTCCCTGGAGCGACTTGAGATCCTAGGTGATTCATTCTTGAAGTATGCCATCACCTCTTCAATCTTCTTCCAGTACAGGTACGAGAATGAGGGCAAGCTGTCTTTCATGCGGGGTCTCAAAGTGAGCAACCGACAGTTGTTTTACCTTGCACGGCAGCAAGGCCTGCCTTCTTATGTGATTACCCGCATGTTCAGCCCTCTGGTCAACTGGCTGCCTCCTGGATTCTATTACAATGATGGTGGTGACACTGAAGGATCGGGAGAAGGAAATCTTCTTTTGATGTCAGAGAAAAGCCCTCAAGAGTTTGAGGACGACGAAGAAGATGGAAGTATTTTTGCAGAGGAAGGACTTTCAGGTCCTAGTGAGGGTCCTTGTAGTCAAGGCCCCTCTGGTAAGGGTCACTCATCTGATATCCAGCTGAGGCACAACTTGCATCTTTGTTGTTCGGACAAGGCCGTTGCCGATGCCACTGAGGCCCTTGTTGGTGCATACCTGTTGTGTCTTGGCCCAGAAGGAGCCTTCGAGTTTCTGAAATGGTTGGGCGTGGAACTCACAAAACAAGAAGAAACTCAAGATGACTATGACGCTAGTAGGTCTTCTGCTAAGGATTCCGCTTTTGGTGCAGATGACTTGGAATCAGACTCAACCATGAACAGTCAGGACGATTTAAAAGTGCCTTTTCAAGCTTGTCAAACATTTGATAGAATCTTCTCCCCGTCGGGAGAGATAGCTTCCATTACTGAGTTCTTATCAAGCCAAAGGTCTACAGCTGCCGAGTTCAAGACACTAGAGGAGGCTCTCAACTACCGCTTTCGTGACAGGTCTTTGCTAGTGCAAGCCTTCACACACACCTCCCTGCCACGTGACTACAACTCTGTACGAAGCAGCTATGAACAACTGGAGTTCTTGGGAGATGCTCTCTTGGATTTTCTTGTGACGCGTCATTTGTACTTACACCACAGACACATGCCCCCTGGCGAGCTAACTGACCTGCGATCGGCTGTGGTGAACAACTACAGTTTTGCTGCTCTGGCGGTCCAACTGGGTTTTCCCAAACACCTGCGATCAATGTCGCCACAGCTGTTCAGCATGGTGAACAAGTTTACAGTGAAGCTAAAGGAAAAAGAGATGAGACAGCAACAAGTCGAGAGTGAAGAGATTTACTCCAGTGTTTTTCTCATAAGAAGCGAGGATGACGAGGAAGGCGCGCAGGTGGAGGTACCCAAGGCATTAGGTGATCTGTTTGAGGCAGTCGCTGGCGCATTGTACGTGGACTGTGGTCAAGACTTGGATAGGGTGTGGCAAGTGTACCTACCTATCCTCAAGCCCTCTATTGATTACTACTCTGCCCACCCCCCTATGTCAGCGATACGAAGGTTGTTGGAGATGATGCCAAATGCTGCCAAGTTTTCGCCAGTGGAGAGAATGGTGGATGGTAAATTCAAATCTACTCTGACGGTGGCAGGGTTTGGAAAATTCGTCGCCACAGGAAGAAATTTCCGAATTGCAAAGTCAAGTGCTGCGCAAAAGGCCCTGAATGTTATCCAAAAGAAAAAGTCTGAGACGAAAGTTGATAGCTCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A974H8H3	Endoribonuclease Dicer-L OS=Xenopus laevis OX=8355 GN=dicer1.L PE=2 SV=1
A0A8J1LLF7	Endoribonuclease Dicer-S OS=Xenopus laevis OX=8355 GN=dicer1.S PE=3 SV=1
Q6TV19	Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006466 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20932 all species →	Dicer_dsRBD	Dicer, dsRNA-binding domain	Domain	Interproscan
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF20931 all species →	Dicer_platform	Dicer, platform domain	Domain	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR044441 all species →	Domain	Dicer, double-stranded RNA-binding domain	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR048512 all species →	Domain	Dicer, platform domain	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11592	DICER1, DCR1; endoribonuclease Dicer	EC:3.1.26.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.