Gene detail

Detailed information of evm.model.Ap13.638_evm.model.Ap13.636.1.5f1688d0 in Astrangia poculata

Genomic Location: Ap13:6488527...6538232
NR annotation: XP_020618826.1, LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.638_evm.model.Ap13.636.1.5f1688d0

atggaggaaaggaaaagggctaaggagttttcctttcagtggccacattatgcagtggacttggttgaaagagcaacggaggtcgatggcgcgagtgttatttgttttgcaagaaaggagtccaagatctttatagcgtttaaggtgttccaagagttttggagaaggaatctgaaaactggaaaaatgattctcttggtagatgacgagaaagccaaaattgtaaagtccttcatgagtggaacactgaaccaaagtatgttgtctgtgaaaacttgttttgatgcgacagatgtcacaaatgaaggacagcattgtgatataatgattatgacaggaaaggttttcctgcagattttaaagactggaataatggatttaacattcttcagtttaattgtttttgatgaatgtcatcttgctattaacaaggagcatccatttgcaatcatattaaagcaagtagcgggatgtgaacatgatttaaggccacaaatagttggtctttcagcaacgattcttctccatcaagctttcccacaagatatggaaaccttccttagctccttggaagagttatttcactgcaaagcacttatttcaaatgaccttctggccacgaacagatatggagaacaagccgatgaagaaatcaagttttacacttgtgaccagcctcaggatgaactcgtctgtaaacttaatgaaatccttgaaagtgccattttatttctaaaagactacagagtgtgtgacgaaacacagacttgtgtgaggtttgtcaaacacattttgactgagatccataaagttcttttatggttaggacaatggtgcactgcttctattgcgagaattgttataagagaaaccaacaagctcgaaaagaagtgcaatgaagacagcaatctgctcctgttgcagtattgcagaacacagatgaatttaattatcaacatgtcagggcaagagaaattggaaggtcctgaaaatagccttactaatctgacaagaaaactgctttttcacatggccacgcatttaaagcttgaagatcaagagttggatactcatcagacaaccctcccaagtgctgatcaaccttgtcaagttccatctcaatctgcaaacttaaaaacttcatatggtactaacagccaatgcgacgaccctttgtgcgtagtgcttgtccctagcacaatcattgccaaggcactgaactcgctcattaacaagctgtcgaaaaccatgccagagtacagcttctttaaaagtgcatgtgttcatggtgacaaagcaaaacaaggaacagccgagcaaagtctatctagtgaaatggaggaggacaatgttatggagtgtgtacaggacggctcggtaaatgttcttgttgcaacattcgaaattgagcaagagttgtatgcacggagatgcagtcttataatacgtctgggcatgccgaaggtttatgagaattatttcagattaaaaagtaaacttaagtgtgctggagcgaagctggtttttcttgtgaaagaagaagaaataggcaagactgaagagaattacaaggttttccagatgatagagaggctcttgaaggaaaggtgtcccaacagccggccaccaggccatgaaataaagaaactgtttgaagatgatttactggatgtttatgaacctcatggggaagacggccctagagttgatcttctctctagcatttctcttcttaacagttattgctccaagtatcccagtagtggtgttggtgcaccagttcttgtctgtagaagaaaggaattgtggtctgatgatgaagtagagtttgtatctgtactctacctgcctcgcaactctccaatttaccaacctatcacgggtagtgtaacactgaagagaaatgaagttaacgagaagacagcaagaaaagctggaatcaagtctgagatgcttgctgcccttgaggcttgtcagcttttacacgaaaaactagagctgagtgacgagcttcagccagtgttcagattcagggttccccgtctgacggcagaaggtgaagtgtgtgaatgtgaggttgctgacagtggtgttggaatggatggctcagtcaagagaaacagagcatacaagagaaagtttccttcaatattggaaaacaattttccagtttgtggcgaaccaagctatgtgtatcgtgtcagcatggagctgaccaaaccatggacgtttcaacgggctgtcaggtcacagagtaaagttcaatctacgtcagctactcattatcttgggattctctccagaaagccactacctaagctgcctggcgtgttgatatttgacagagctggagaggtcactgcaatggtgacagagtgcagtgcacatcctgttgtccttactactgatcaagagtcactcctgcagagattcactgggtatgtcttcagggagattgcaaaaccaaagaaacatgactcagctacttttccgtcatttgacccatccattgccacttctgggtattacatttcacttctaagtgatgcccctggtagctgttcctctcagttaaacgcaacactgcaacgcaaggaaattgcattcgatttcatgcactccattgaggatgcacttggcagcttcgacaatcccactgacccaccccctcctggtgttaaagacccagagattttcagggatgcagtagtgacagccatttaccaagataaaaacactcattattacgtggctgacatctgctatgaccgtagccccgcagatccgtttccaaactctgatctagccagtacttttgccgagtactatcaaaagcgatacgaagtcgaggtatcgttggatcaacccatgctggatgtcgatcacacatcttctcgactcaacttcctgacgccccgctatcaaaacatcaaaggccaacatctttctgtacccgagaaagattccaagaggtcgcagaagtccatggtctttgtaattcctgagctgtgctccattcatccggtgccaggatatctgtggaggcagcttttcaatttgccagctgtgctgtaccgcatggagtcacttctagttgctgaggagcttaggtcccatattgcctgtgttcttgacatgggagctgttgattggccaagtgatgttccgctgccattgttgacaatgggtgaaatggttggagaggagattgtgcataaaccgtattctgccgcagaggaatcaattgacaagtcttcttctaagatggctacagagaagctcaccagtctgcactgcgcagagctgtctgaagcgttaacagatctacgaatttccggacagaatgagcacaatgagatgcaacctgcagatagcttgcccttacaagatgctaatgctcatgccactactcattcttcgccaaagatcgttagtgatgaaacatgttttgaaggttcttgcactgaagctaagagggaagtttctcataactttagcggagcgaaggtggattctttacagagggagctctttgacagaaattcctctgttcctttagaccaaggagcattgcctggtgacaacagtaaaactgcgcttgagttggaaagtgaattgtctcccatcacaatttggactgacccgcttatctccagcttataccaaacctgtggtccaccatcaaccttgattcttcgcgctctcaccacaggtatcactggagacgtgttttccctggagcgacttgagatcctaggtgattcattcttgaagtatgccatcacctcttcaatcttcttccagtacaggtacgagaatgagggcaagctgtctttcatgcggggtctcaaagtgagcaaccgacagttgttttaccttgcacggcagcaaggcctgccttcttatgtgattacccgcatgttcagccctctggtcaactggctgcctcctggattctattacaatgatggtggtgacactgaaggatcgggagaaggaaatcttcttttgatgtcagagaaaagccctcaagagtttgaggacgacgaagaagatggaagtatttttgcagaggaaggactttcaggtcctagtgagggtccttgtagtcaaggcccctctggtaagggtcactcatctgatatccagctgaggcacaacttgcatctttgttgttcggacaaggccgttgccgatgccactgaggcccttgttggtgcatacctgttgtgtcttggcccagaaggagccttcgagtttctgaaatggttgggcgtggaactcacaaaacaagaagaaactcaagatgactatgacgctagtaggtcttctgctaaggattccgcttttggtgcagatgacttggaatcagactcaaccatgaacagtcaggacgatttaaaagtgccttttcaagcttgtcaaacatttgatagaatcttctccccgtcgggagagatagcttccattactgagttcttatcaagccaaaggtctacagctgccgagttcaagacactagaggaggctctcaactaccgctttcgtgacaggtctttgctagtgcaagccttcacacacacctccctgccacgtgactacaactctgtacgaagcagctatgaacaactggagttcttgggagatgctctcttggattttcttgtgacgcgtcatttgtacttacaccacagacacatgccccctggcgagctaactgacctgcgatcggctgtggtgaacaactacagttttgctgctctggcggtccaactgggttttcccaaacacctgcgatcaatgtcgccacagctgttcagcatggtgaacaagtttacagtgaagctaaaggaaaaagagatgagacagcaacaagtcgagagtgaagagatttactccagtgtttttctcatgagaagcgagggtgacgaggaaggcgcgcaggtggaggtacccaaggcattaggtgacctgtttgaggcagtcgctggcgcattgtacgtggactgtggtcaagacctggatacggtgtggcaagtgtaccaacccatcctcaagccctctattgattactactctgcccacccccctatgtcggcgatacgaaggttattggagatgatgccaaatgctgccaagttctcgccagtggagagaatggtggatggtaaattcaaatctactctgacggtggcagggtttggaaaattcgtcgccacaggaagaaatttccgaattgcaaagtcaagtgctgcgcaaaaggccctgaatgttatccaaaagaaaaagtctgagacgaaagttgatagctcgtaa

Transcript

evm.model.Ap13.638_evm.model.Ap13.636.1.5f1688d0

ATGGAGGAAAGGAAAAGGGCTAAGGAGTTTTCCTTTCAGTGGCCACATTATGCAGTGGACTTGGTTGAAAGAGCAACGGAGGTCGATGGCGCGAGTGTTATTTGTTTTGCAAGAAAGGAGTCCAAGATCTTTATAGCGTTTAAGGTGTTCCAAGAGTTTTGGAGAAGGAATCTGAAAACTGGAAAAATGATTCTCTTGGTAGATGACGAGAAAGCCAAAATTGTAAAGTCCTTCATGAGTGGAACACTGAACCAAAGTATGTTGTCTGTGAAAACTTGTTTTGATGCGACAGATGTCACAAATGAAGGACAGCATTGTGATATAATGATTATGACAGGAAAGGTTTTCCTGCAGATTTTAAAGACTGGAATAATGGATTTAACATTCTTCAGTTTAATTGTTTTTGATGAATGTCATCTTGCTATTAACAAGGAGCATCCATTTGCAATCATATTAAAGCAAGTAGCGGGATGTGAACATGATTTAAGGCCACAAATAGTTGGTCTTTCAGCAACGATTCTTCTCCATCAAGCTTTCCCACAAGATATGGAAACCTTCCTTAGCTCCTTGGAAGAGTTATTTCACTGCAAAGCACTTATTTCAAATGACCTTCTGGCCACGAACAGATATGGAGAACAAGCCGATGAAGAAATCAAGTTTTACACTTGTGACCAGCCTCAGGATGAACTCGTCTGTAAACTTAATGAAATCCTTGAAAGTGCCATTTTATTTCTAAAAGACTACAGAGTGTGTGACGAAACACAGACTTGTGTGAGGTTTGTCAAACACATTTTGACTGAGATCCATAAAGTTCTTTTATGGTTAGGACAATGGTGCACTGCTTCTATTGCGAGAATTGTTATAAGAGAAACCAACAAGCTCGAAAAGAAGTGCAATGAAGACAGCAATCTGCTCCTGTTGCAGTATTGCAGAACACAGATGAATTTAATTATCAACATGTCAGGGCAAGAGAAATTGGAAGGTCCTGAAAATAGCCTTACTAATCTGACAAGAAAACTGCTTTTTCACATGGCCACGCATTTAAAGCTTGAAGATCAAGAGTTGGATACTCATCAGACAACCCTCCCAAGTGCTGATCAACCTTGTCAAGTTCCATCTCAATCTGCAAACTTAAAAACTTCATATGGTACTAACAGCCAATGCGACGACCCTTTGTGCGTAGTGCTTGTCCCTAGCACAATCATTGCCAAGGCACTGAACTCGCTCATTAACAAGCTGTCGAAAACCATGCCAGAGTACAGCTTCTTTAAAAGTGCATGTGTTCATGGTGACAAAGCAAAACAAGGAACAGCCGAGCAAAGTCTATCTAGTGAAATGGAGGAGGACAATGTTATGGAGTGTGTACAGGACGGCTCGGTAAATGTTCTTGTTGCAACATTCGAAATTGAGCAAGAGTTGTATGCACGGAGATGCAGTCTTATAATACGTCTGGGCATGCCGAAGGTTTATGAGAATTATTTCAGATTAAAAAGTAAACTTAAGTGTGCTGGAGCGAAGCTGGTTTTTCTTGTGAAAGAAGAAGAAATAGGCAAGACTGAAGAGAATTACAAGGTTTTCCAGATGATAGAGAGGCTCTTGAAGGAAAGGTGTCCCAACAGCCGGCCACCAGGCCATGAAATAAAGAAACTGTTTGAAGATGATTTACTGGATGTTTATGAACCTCATGGGGAAGACGGCCCTAGAGTTGATCTTCTCTCTAGCATTTCTCTTCTTAACAGTTATTGCTCCAAGTATCCCAGTAGTGGTGTTGGTGCACCAGTTCTTGTCTGTAGAAGAAAGGAATTGTGGTCTGATGATGAAGTAGAGTTTGTATCTGTACTCTACCTGCCTCGCAACTCTCCAATTTACCAACCTATCACGGGTAGTGTAACACTGAAGAGAAATGAAGTTAACGAGAAGACAGCAAGAAAAGCTGGAATCAAGTCTGAGATGCTTGCTGCCCTTGAGGCTTGTCAGCTTTTACACGAAAAACTAGAGCTGAGTGACGAGCTTCAGCCAGTGTTCAGATTCAGGGTTCCCCGTCTGACGGCAGAAGGTGAAGTGTGTGAATGTGAGGTTGCTGACAGTGGTGTTGGAATGGATGGCTCAGTCAAGAGAAACAGAGCATACAAGAGAAAGTTTCCTTCAATATTGGAAAACAATTTTCCAGTTTGTGGCGAACCAAGCTATGTGTATCGTGTCAGCATGGAGCTGACCAAACCATGGACGTTTCAACGGGCTGTCAGGTCACAGAGTAAAGTTCAATCTACGTCAGCTACTCATTATCTTGGGATTCTCTCCAGAAAGCCACTACCTAAGCTGCCTGGCGTGTTGATATTTGACAGAGCTGGAGAGGTCACTGCAATGGTGACAGAGTGCAGTGCACATCCTGTTGTCCTTACTACTGATCAAGAGTCACTCCTGCAGAGATTCACTGGGTATGTCTTCAGGGAGATTGCAAAACCAAAGAAACATGACTCAGCTACTTTTCCGTCATTTGACCCATCCATTGCCACTTCTGGGTATTACATTTCACTTCTAAGTGATGCCCCTGGTAGCTGTTCCTCTCAGTTAAACGCAACACTGCAACGCAAGGAAATTGCATTCGATTTCATGCACTCCATTGAGGATGCACTTGGCAGCTTCGACAATCCCACTGACCCACCCCCTCCTGGTGTTAAAGACCCAGAGATTTTCAGGGATGCAGTAGTGACAGCCATTTACCAAGATAAAAACACTCATTATTACGTGGCTGACATCTGCTATGACCGTAGCCCCGCAGATCCGTTTCCAAACTCTGATCTAGCCAGTACTTTTGCCGAGTACTATCAAAAGCGATACGAAGTCGAGGTATCGTTGGATCAACCCATGCTGGATGTCGATCACACATCTTCTCGACTCAACTTCCTGACGCCCCGCTATCAAAACATCAAAGGCCAACATCTTTCTGTACCCGAGAAAGATTCCAAGAGGTCGCAGAAGTCCATGGTCTTTGTAATTCCTGAGCTGTGCTCCATTCATCCGGTGCCAGGATATCTGTGGAGGCAGCTTTTCAATTTGCCAGCTGTGCTGTACCGCATGGAGTCACTTCTAGTTGCTGAGGAGCTTAGGTCCCATATTGCCTGTGTTCTTGACATGGGAGCTGTTGATTGGCCAAGTGATGTTCCGCTGCCATTGTTGACAATGGGTGAAATGGTTGGAGAGGAGATTGTGCATAAACCGTATTCTGCCGCAGAGGAATCAATTGACAAGTCTTCTTCTAAGATGGCTACAGAGAAGCTCACCAGTCTGCACTGCGCAGAGCTGTCTGAAGCGTTAACAGATCTACGAATTTCCGGACAGAATGAGCACAATGAGATGCAACCTGCAGATAGCTTGCCCTTACAAGATGCTAATGCTCATGCCACTACTCATTCTTCGCCAAAGATCGTTAGTGATGAAACATGTTTTGAAGGTTCTTGCACTGAAGCTAAGAGGGAAGTTTCTCATAACTTTAGCGGAGCGAAGGTGGATTCTTTACAGAGGGAGCTCTTTGACAGAAATTCCTCTGTTCCTTTAGACCAAGGAGCATTGCCTGGTGACAACAGTAAAACTGCGCTTGAGTTGGAAAGTGAATTGTCTCCCATCACAATTTGGACTGACCCGCTTATCTCCAGCTTATACCAAACCTGTGGTCCACCATCAACCTTGATTCTTCGCGCTCTCACCACAGGTATCACTGGAGACGTGTTTTCCCTGGAGCGACTTGAGATCCTAGGTGATTCATTCTTGAAGTATGCCATCACCTCTTCAATCTTCTTCCAGTACAGGTACGAGAATGAGGGCAAGCTGTCTTTCATGCGGGGTCTCAAAGTGAGCAACCGACAGTTGTTTTACCTTGCACGGCAGCAAGGCCTGCCTTCTTATGTGATTACCCGCATGTTCAGCCCTCTGGTCAACTGGCTGCCTCCTGGATTCTATTACAATGATGGTGGTGACACTGAAGGATCGGGAGAAGGAAATCTTCTTTTGATGTCAGAGAAAAGCCCTCAAGAGTTTGAGGACGACGAAGAAGATGGAAGTATTTTTGCAGAGGAAGGACTTTCAGGTCCTAGTGAGGGTCCTTGTAGTCAAGGCCCCTCTGGTAAGGGTCACTCATCTGATATCCAGCTGAGGCACAACTTGCATCTTTGTTGTTCGGACAAGGCCGTTGCCGATGCCACTGAGGCCCTTGTTGGTGCATACCTGTTGTGTCTTGGCCCAGAAGGAGCCTTCGAGTTTCTGAAATGGTTGGGCGTGGAACTCACAAAACAAGAAGAAACTCAAGATGACTATGACGCTAGTAGGTCTTCTGCTAAGGATTCCGCTTTTGGTGCAGATGACTTGGAATCAGACTCAACCATGAACAGTCAGGACGATTTAAAAGTGCCTTTTCAAGCTTGTCAAACATTTGATAGAATCTTCTCCCCGTCGGGAGAGATAGCTTCCATTACTGAGTTCTTATCAAGCCAAAGGTCTACAGCTGCCGAGTTCAAGACACTAGAGGAGGCTCTCAACTACCGCTTTCGTGACAGGTCTTTGCTAGTGCAAGCCTTCACACACACCTCCCTGCCACGTGACTACAACTCTGTACGAAGCAGCTATGAACAACTGGAGTTCTTGGGAGATGCTCTCTTGGATTTTCTTGTGACGCGTCATTTGTACTTACACCACAGACACATGCCCCCTGGCGAGCTAACTGACCTGCGATCGGCTGTGGTGAACAACTACAGTTTTGCTGCTCTGGCGGTCCAACTGGGTTTTCCCAAACACCTGCGATCAATGTCGCCACAGCTGTTCAGCATGGTGAACAAGTTTACAGTGAAGCTAAAGGAAAAAGAGATGAGACAGCAACAAGTCGAGAGTGAAGAGATTTACTCCAGTGTTTTTCTCATGAGAAGCGAGGGTGACGAGGAAGGCGCGCAGGTGGAGGTACCCAAGGCATTAGGTGACCTGTTTGAGGCAGTCGCTGGCGCATTGTACGTGGACTGTGGTCAAGACCTGGATACGGTGTGGCAAGTGTACCAACCCATCCTCAAGCCCTCTATTGATTACTACTCTGCCCACCCCCCTATGTCGGCGATACGAAGGTTATTGGAGATGATGCCAAATGCTGCCAAGTTCTCGCCAGTGGAGAGAATGGTGGATGGTAAATTCAAATCTACTCTGACGGTGGCAGGGTTTGGAAAATTCGTCGCCACAGGAAGAAATTTCCGAATTGCAAAGTCAAGTGCTGCGCAAAAGGCCCTGAATGTTATCCAAAAGAAAAAGTCTGAGACGAAAGTTGATAGCTCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A974H8H3	Endoribonuclease Dicer-L OS=Xenopus laevis OX=8355 GN=dicer1.L PE=2 SV=1
A0A8J1LLF7	Endoribonuclease Dicer-S OS=Xenopus laevis OX=8355 GN=dicer1.S PE=3 SV=1
Q6TV19	Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006466 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF20931 all species →	Dicer_platform	Dicer, platform domain	Domain	Interproscan
PF20932 all species →	Dicer_dsRBD	Dicer, dsRNA-binding domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR048512 all species →	Domain	Dicer, platform domain	Interproscan
IPR044441 all species →	Domain	Dicer, double-stranded RNA-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11592	DICER1, DCR1; endoribonuclease Dicer	EC:3.1.26.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.638_evm.model.Ap13.636.1.5f1688d0 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism · cold control	14	0	0.00	0.00
whole organism · heat control	12	0	0.00	0.00
whole organism · cold challenge	12	0	0.00	0.00
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.