Gene detail

Detailed information of evm.model.Ap13.64 in Astrangia poculata

Genomic Location: Ap13:556452...570535
NR annotation: KAJ7379922.1, hippo signaling [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.64

atgaagatgccttttttcgggaagtatttcttaaagaagaaaggaaagggattgaaagaaaagctacaaggaaaatacagaaagcgcgaaaacacgactgaaattcttgaagaacgtttgaagagatgcacttccacaccttgtattcaagcagtactttctgaggcagaaattgcagagtcatacattgtggactgtcctagcactgaaaatgccgggattttaatggttactcatgataataatccaaacaggacacatggcgctcatcagtatttcgaactggcggatgctagtgacagagtctcgcagtccagctatgaaaatagcagacacgataacatgaatgacattttagaggctgttcaaaggcttcggttgaatgagtcatgtcagtcttgttccacaagccagacaccccaagaggtaggaaaagttggttatcgacacccgccaccttatcctgaacaagtggaacaaactgtgtctagccctttggacaaatatcggcatccaccgccctacagagagcctgaagacaccatgtccagctttgatgggtcgagtttttatgcacacagaggaaacatgggtaatgattacagctcgttttataaccttgaggaattgaactacagacatcctccatcttatggtcattttagggctgttcctgggtcttcaggtgataccttctcactggacagcagagtagctaatggacctcagaatcacaaagtgatcaagaaagtgatgagcgactccaatttgaaccctaatgggtataactacgcacagcgcgcaccagcaaagaacacatcagatgtctatggaaacaaagtactttataatgcatatggcaccaaaccgttttccagtgtgcaggattcatttagttatgatatgtcatatggcgatccttatacttcggaagctggttcacgcaagtttggtttctacccaggccagggtacatcgacaaacaacctgtttagcgaaaatggaagtgacgtgcttacttcttatgctgacagcccttcccctcccaattcaggtggaagccagtcggtctacacttcacaggcacaatctatggcgaaatcacaagggtcagttgctatgcaacagggaggttttggtgatcagaagttctttccttctggcaacatgaatgagaaaaggaatctagtgttcaatggcagtcagctgaaccaactggatctctctcttcctcctgggtttgaagtggcctggactcctgatgggaggaaatattatatagatcacaacacagaatcaacagactggtgccatcctcttgagaaagcaggcctaccagatggctgggagaaaattgaatctccaaactttggcgtttactatgtcaatcataacttaaaggtgacacagtatgaacatccagccaaaacacagttcatccagcagcaacatcagcaagagatgagagcatcagacagtgggcgtcaggaatcacaggctatccctgcgcagaatcctttggtcccagccaatccatacattactgaagaaataccagaatggcttcaagtatatgctaaggccagcccagagtatgactgtttcctaaagtgggacttatttcgttacgccgagttggattgttggcagtcaatgctcaaaagactgtacaagaaagaagtggaacaagttgtgatgcgacatgaggagtacagacaagccttgcagagggaatttgagcaaaaacagaagctgcaacaagaagaggagcagagattgagcaaccaagctctggcagacctagacgagttagataaagaacttgctaagtttgccgagttgaaaattaccgcacaggatggccatttcacgcaagaaaaacaatttgggattttaccaggcagtgatcttttggacgttgatttttacgttcatccgaacgattcttctgttgtaggaattaaatttcacatggaggaagaggctcgaaaccttgctaagcagcttattcaagaactggaagattccttcaagaaaaaccccgtaaatacggcttccattgctttgcttccaaaaattgcgctagctactggcgcgtctagcaatcattttgatgaactgatagcacacatcgacaaagtacctttagtttttccgaacagaacgctcatcgtgtatgacttgggcctcaacgaaacagaaatgaaaaaggttcgagaaataaattttgtggagtacagaaaatttaattttaccgggtacccgaagcacgtgaaagacttgcatacgtacgcgtggaaaccattgattcttcaacaattactttgccaatatggcggtgcaatgtggatggattcgtcgattgttttgactcggaatatcacttatttactacagcgaatggtgaggctacaaacaggatttttgttttatcttcctggcgcgggtcactctatcgcatctgcaactcacccacaaatgttacaatatctaccaatggctgatcttgacgttatgacagaagaaatgaaccagggcggaggaacaatagttttaaacacgccacaagttcgcagagatattttcagatgggcgcttgtttgcgcacttcacagggagtgtataacgccatcaggatctaagctttactgtgatttcaaatttccaaaagatcagtttggcggttgccatcgttacgaccaagctatgctctcaataattgtagcaaacgcaaacaattacaagaaagaaatgtatcttctgaagggaaatgaatatccttgtgaaataaagaagatgtaa

Transcript

evm.model.Ap13.64

ATGAAGATGCCTTTTTTCGGGAAGTATTTCTTAAAGAAGAAAGGAAAGGGATTGAAAGAAAAGCTACAAGGAAAATACAGAAAGCGCGAAAACACGACTGAAATTCTTGAAGAACGTTTGAAGAGATGCACTTCCACACCTTGTATTCAAGCAGTACTTTCTGAGGCAGAAATTGCAGAGTCATACATTGTGGACTGTCCTAGCACTGAAAATGCCGGGATTTTAATGGTTACTCATGATAATAATCCAAACAGGACACATGGCGCTCATCAGTATTTCGAACTGGCGGATGCTAGTGACAGAGTCTCGCAGTCCAGCTATGAAAATAGCAGACACGATAACATGAATGACATTTTAGAGGCTGTTCAAAGGCTTCGGTTGAATGAGTCATGTCAGTCTTGTTCCACAAGCCAGACACCCCAAGAGGTAGGAAAAGTTGGTTATCGACACCCGCCACCTTATCCTGAACAAGTGGAACAAACTGTGTCTAGCCCTTTGGACAAATATCGGCATCCACCGCCCTACAGAGAGCCTGAAGACACCATGTCCAGCTTTGATGGGTCGAGTTTTTATGCACACAGAGGAAACATGGGTAATGATTACAGCTCGTTTTATAACCTTGAGGAATTGAACTACAGACATCCTCCATCTTATGGTCATTTTAGGGCTGTTCCTGGGTCTTCAGGTGATACCTTCTCACTGGACAGCAGAGTAGCTAATGGACCTCAGAATCACAAAGTGATCAAGAAAGTGATGAGCGACTCCAATTTGAACCCTAATGGGTATAACTACGCACAGCGCGCACCAGCAAAGAACACATCAGATGTCTATGGAAACAAAGTACTTTATAATGCATATGGCACCAAACCGTTTTCCAGTGTGCAGGATTCATTTAGTTATGATATGTCATATGGCGATCCTTATACTTCGGAAGCTGGTTCACGCAAGTTTGGTTTCTACCCAGGCCAGGGTACATCGACAAACAACCTGTTTAGCGAAAATGGAAGTGACGTGCTTACTTCTTATGCTGACAGCCCTTCCCCTCCCAATTCAGGTGGAAGCCAGTCGGTCTACACTTCACAGGCACAATCTATGGCGAAATCACAAGGGTCAGTTGCTATGCAACAGGGAGGTTTTGGTGATCAGAAGTTCTTTCCTTCTGGCAACATGAATGAGAAAAGGAATCTAGTGTTCAATGGCAGTCAGCTGAACCAACTGGATCTCTCTCTTCCTCCTGGGTTTGAAGTGGCCTGGACTCCTGATGGGAGGAAATATTATATAGATCACAACACAGAATCAACAGACTGGTGCCATCCTCTTGAGAAAGCAGGCCTACCAGATGGCTGGGAGAAAATTGAATCTCCAAACTTTGGCGTTTACTATGTCAATCATAACTTAAAGGTGACACAGTATGAACATCCAGCCAAAACACAGTTCATCCAGCAGCAACATCAGCAAGAGATGAGAGCATCAGACAGTGGGCGTCAGGAATCACAGGCTATCCCTGCGCAGAATCCTTTGGTCCCAGCCAATCCATACATTACTGAAGAAATACCAGAATGGCTTCAAGTATATGCTAAGGCCAGCCCAGAGTATGACTGTTTCCTAAAGTGGGACTTATTTCGTTACGCCGAGTTGGATTGTTGGCAGTCAATGCTCAAAAGACTGTACAAGAAAGAAGTGGAACAAGTTGTGATGCGACATGAGGAGTACAGACAAGCCTTGCAGAGGGAATTTGAGCAAAAACAGAAGCTGCAACAAGAAGAGGAGCAGAGATTGAGCAACCAAGCTCTGGCAGACCTAGACGAGTTAGATAAAGAACTTGCTAAGTTTGCCGAGTTGAAAATTACCGCACAGGATGGCCATTTCACGCAAGAAAAACAATTTGGGATTTTACCAGGCAGTGATCTTTTGGACGTTGATTTTTACGTTCATCCGAACGATTCTTCTGTTGTAGGAATTAAATTTCACATGGAGGAAGAGGCTCGAAACCTTGCTAAGCAGCTTATTCAAGAACTGGAAGATTCCTTCAAGAAAAACCCCGTAAATACGGCTTCCATTGCTTTGCTTCCAAAAATTGCGCTAGCTACTGGCGCGTCTAGCAATCATTTTGATGAACTGATAGCACACATCGACAAAGTACCTTTAGTTTTTCCGAACAGAACGCTCATCGTGTATGACTTGGGCCTCAACGAAACAGAAATGAAAAAGGTTCGAGAAATAAATTTTGTGGAGTACAGAAAATTTAATTTTACCGGGTACCCGAAGCACGTGAAAGACTTGCATACGTACGCGTGGAAACCATTGATTCTTCAACAATTACTTTGCCAATATGGCGGTGCAATGTGGATGGATTCGTCGATTGTTTTGACTCGGAATATCACTTATTTACTACAGCGAATGGTGAGGCTACAAACAGGATTTTTGTTTTATCTTCCTGGCGCGGGTCACTCTATCGCATCTGCAACTCACCCACAAATGTTACAATATCTACCAATGGCTGATCTTGACGTTATGACAGAAGAAATGAACCAGGGCGGAGGAACAATAGTTTTAAACACGCCACAAGTTCGCAGAGATATTTTCAGATGGGCGCTTGTTTGCGCACTTCACAGGGAGTGTATAACGCCATCAGGATCTAAGCTTTACTGTGATTTCAAATTTCCAAAAGATCAGTTTGGCGGTTGCCATCGTTACGACCAAGCTATGCTCTCAATAATTGTAGCAAACGCAAACAATTACAAGAAAGAAATGTATCTTCTGAAGGGAAATGAATATCCTTGTGAAATAAAGAAGATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H4B6	Protein salvador homolog 1 OS=Homo sapiens OX=9606 GN=SAV1 PE=1 SV=2
Q8VEB2	Protein salvador homolog 1 OS=Mus musculus OX=10090 GN=Sav1 PE=1 SV=2
A4V8B4	Protein salvador homolog 1 OS=Rattus norvegicus OX=10116 GN=Sav1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF07801 all species →	DUF1647	Protein of unknown function (DUF1647)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR012444 all species →	Family	Protein of unknown function DUF1647	Interproscan
IPR030030 all species →	Family	Scaffold protein salvador	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47522 all species →	SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035329 all species →	Biological Process	hippo signaling	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.64.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.