Detailed information of evm.model.Ap13.774 in Astrangia poculata

Genomic Location: Ap13:7849725...7858904
NR annotation: XP_020613816.1, uncharacterized protein LOC110052033 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5E9P6Seipin OS=Bos taurus OX=9913 GN=BSCL2 PE=2 SV=1
Q96G97Seipin OS=Homo sapiens OX=9606 GN=BSCL2 PE=1 SV=3
Q5FVJ6Seipin OS=Rattus norvegicus OX=10116 GN=Bscl2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006500 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06775
all species →		SeipinPutative adipose-regulatory protein (Seipin)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009617
all species →		FamilySeipin familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21212
all species →		BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0019915
all species →		Biological Processlipid storageInterproscan
GO:0030176
all species →		Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0034389
all species →		Biological Processlipid droplet organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.774.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.774 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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