Detailed information of evm.model.Ap13.778.1.5f15dd99 in Astrangia poculata

Genomic Location: Ap13:7893017...7904456
NR annotation: XP_020613672.1, phosphatidylinositol-glycan biosynthesis class F protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q07326GPI ethanolamine phosphate transferase, stabilizing subunit OS=Homo sapiens OX=9606 GN=PIGF PE=1 SV=1
O09101GPI ethanolamine phosphate transferase, stabilizing subunit OS=Mus musculus OX=10090 GN=Pigf PE=1 SV=1
Q6C741Glycosylphosphatidylinositol anchor biosynthesis protein 11 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=GPI11 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008588 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06699
all species →		PIG-FGPI biosynthesis protein family Pig-FFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009580
all species →		FamilyGPI biosynthesis protein Pig-FInterproscan

 PANTHER
No PANTHER signature was recorded for evm.model.Ap13.778.1.5f15dd99 in Astrangia poculata.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0006506
all species →		Biological ProcessGPI anchor biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05287PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F-Glycosylphosphatidylinositol (GPI)-anchor biosynthesisko00563deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.778.1.5f15dd99 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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