Gene detail

Detailed information of evm.model.Ap13.779 in Astrangia poculata

Genomic Location: Ap13:7908412...7929086
NR annotation: XP_020613758.1, autophagy-related protein 2 homolog A-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.779

ttgctgaagttattgtctagtgatggtcaagcagcgccttattttggacttaatccaacgtcttcccttccctgcctcagactcaagtacagaagcactcaaagaacaacctcaccaaacgtagacaactatacagattttactgctaggaaccctgaacctggagggcgacagggcgtcgttcaaggtcgcaatgttgtgttaccaaagacagaattgtccctggagctgggtggcctgctctgtgaagtagacgtgtctatagtcgacagactggctgcattgttggacccccaacctgtgtttatgaaccacccctcaaacatgcagtcgcgcatgtttaaatcttgtaatccctcaatagtgaaccagcaggctgtgtttactcaagccatggaagatactcctgcagtagaacagccttttaacattcacctgtcctgcccttcactctctctggtcttaagatttcctattccagacttacgcccagctgtggatcgtcgcccttggtggaaacagtccttgaggaaggagcgtttagtatttgactttactgctgtagaattcaacacgtgcctcactggatctgaacttgcctgtcattacgatatcagctttaaagaactgcatggttacttccaggaagatacaagcagtgacaaaatgcctgttatttacgtgacgcataatcagacagagagcgacacaggaaatggtggatttgactggccacgtattggtgatgaaataacgtcatttgtttgtaggattgtgatcacagtccagccacctgctcctctgtcagctctagaggaagtcccctcatcagataactcccctctcagctccctggatgcgtaccctatgatgaaagctgagccatctccattctcctccagacctgtcatgtttgagacagaagagcttctaatgcctggcacccaggaagaaatgaatcggtttcaagaagatacagtgtcgtcatccaaagtacatgtagaatgcaccttccccaggctggatgtcaacctacatacaaaggatgtctttgagaacatctacaacaggctggcaagtgacttgttgctatgggaacccatggctccctctccagcagaccggcctgacccatgtggattcaatgttggcacagggttggacctagccagtcagatgatgcaggcacaaggaccagatcggtttgtcatgtgcagatcaggcctacgcagttacgatgatgatgcatcctcatctgatgaagaaagcagtaattttacgtcactggaaaataaatacaaacgcacaaactccaaccctaatggccagacagccttcacacttacgctcagtgtaggcaaggctagactagcagtttttcctgaaagtgagatttcttctctcagtggaagttccaaggactgtagctcatgttctgaagaagtacttggagaaatagcagcagagtttaatgacattacattctttgtagcagcttgttacaaaagtcaagtcgatcttacctacctgtgtcttcaatctcaaaaggtcgcttttcagcatgcgcctgtagtgccacagggggcccacgtgtccatggagtccgcctttagtggagctgagctccagtctaccttctaccacactgaaccgggcatacgacaggtggacgggaggactagtgaaccaatgtttgcttttgcgatcaaagtttcagcggatacgtcgaaaaacattaaagaaatcctcttttcactgggactccgtagaagcactcttcgccataggatgctttcttctaaacagatgtggctcacacaggtaagagatttctttgacgtgaaggatgatccggttcttggtttcagtcccccagcggttgtgacagtgtttcacactcacgtatgggaaggcaccattgattacaggccaattcaccttccgttacgagttcttgtcaccatggaaacgttcagtgtgtcaagtaacatcacgatcgagtccaatgtctctttgctgagatttattattgatgatgcggcgttatatctctcggacaaatgcagtggttctgcaaatatcagaaactatgtatgtgtgttagatcttgggatgtttgagctgtctcttttcacgtgtgacggcagtgaacagggtcatccccaggtggaactgcgcatgtctaacaacacagttcatgtcaggacatgctcggactcatgttccgctctgcttcagctgattcagtacatcgctgcagacggagacctggtgcctagctatgaaccggaagtaccagatgccacaaaaacaccaccgactccaagccgctgcccagctgatccgccggtcaagcaggggtctgtggatgagggtgagctaagcagtatcatgacagaggccatggtagatacgcactgtgtggatgagccctctcacgataagggctttaaaggagagttgaatcagcagctttccagatcaccgaggcgagacctgttcctatttcctgatgatgagttgggcagtccagttgaggagtatttcccccctgaagataccaacatggaggtggcaaatccgggggagtcaggcgatgatgaggaggatagtgatgatgatttctgtattctggagcatcccgataaagaacctgaaggtttgagccacgaggtgatcatcaaatgcctcacagatgaacaagtcaacattgtagagaatcattttactgttccaatgggcccaagtgatcaactttgcgcccctagtcattttccgtcagcggtattttgttacacgttaaaggagatgtctgtggtgtggcatttgtttggtggacgggactttggtggctcagcgtcacgtgaccaaaagaaaaaaataagctttgcactagatgaaaaagggaagcccgtcgaccgttcctctgtgagcagacccactgtgttactgagtaaaaacacctcagccgcagctaatagcgtgaagaaacgtagcggaggacctgacagaaataaccatgtactcatggagtttcacctaaacaagattcgtttacagtatgagcagtacccagaagacacagagcaggcctcgcgactggtggtgctcgtacaggatgtagagataagggaccgattagcacattcacagataaacaagtttctgtaccagtacacgtctgaggcctgtccaaaacagtcccatgctaacatgatcttactcaagatgttgtacattcgtcctgatcctggtcttaaagcacaggagtgtaatctgagagtgtccattcagccactgaggctcaatgtggaccaggatgccttgtttttcttgaggaattttttctcggagataatgggagaagctgctaaaaaccctaaaggttcaagtgcagttgattccagtcctgttaagccacccccagattctgactggttaacagaattctctgacgctgaggagaccctggtgaactccgccagtgagtccgagccagacaccactcaaccagcccctacgttttttaggtcctttatattttctcccgaggtgcctatcaggctggactatcagggcaagagagttgatatggaacagggtaccctggctggtctattaatcggtcttggtcagctcaactgctccgaacttcgtctaaagcgcctgtgttgtcgtagcggcttacttggaatagacagagtgatgaactacgctctgtctgagtggctggcggacatcagaggcacccagctacccgggatactgggtggagtcggtcctgtgcactccttcctgcagttgttccaaggtctagtggacctagtgtggctgcctatagaccagtaccggcgggatgggcgtgtcatgagggggctgcagagaggggccaactcgttcactacatcatcggctatggccttccttgaactaaccaacagagttgtgcagttgatacaggcggcggcagagacagcgtatgacgtagtgagcccagactccccagtcaaacgcggtcagaatcgccaggcccagcaaccgtttgacttgcgggaaggagtttccaatgcgtatcaagtcttcagagagggattgggtcaaacggctacaaacattgttcaagtcgccaaagatgaacacgaacagaaaggcgtgacgggggctgtaggaggtgtcctgcgtcaagtcccagcaaccgtggtccagccccttatcctggctacagaggctacttccaatgtcctgggaggggtccgtaatcaaatcttgcccgatgcgcggcgagaagctgcggaaaaatggcgatctagtccttga

Transcript

evm.model.Ap13.779

TTGCTGAAGTTATTGTCTAGTGATGGTCAAGCAGCGCCTTATTTTGGACTTAATCCAACGTCTTCCCTTCCCTGCCTCAGACTCAAGTACAGAAGCACTCAAAGAACAACCTCACCAAACGTAGACAACTATACAGATTTTACTGCTAGGAACCCTGAACCTGGAGGGCGACAGGGCGTCGTTCAAGGTCGCAATGTTGTGTTACCAAAGACAGAATTGTCCCTGGAGCTGGGTGGCCTGCTCTGTGAAGTAGACGTGTCTATAGTCGACAGACTGGCTGCATTGTTGGACCCCCAACCTGTGTTTATGAACCACCCCTCAAACATGCAGTCGCGCATGTTTAAATCTTGTAATCCCTCAATAGTGAACCAGCAGGCTGTGTTTACTCAAGCCATGGAAGATACTCCTGCAGTAGAACAGCCTTTTAACATTCACCTGTCCTGCCCTTCACTCTCTCTGGTCTTAAGATTTCCTATTCCAGACTTACGCCCAGCTGTGGATCGTCGCCCTTGGTGGAAACAGTCCTTGAGGAAGGAGCGTTTAGTATTTGACTTTACTGCTGTAGAATTCAACACGTGCCTCACTGGATCTGAACTTGCCTGTCATTACGATATCAGCTTTAAAGAACTGCATGGTTACTTCCAGGAAGATACAAGCAGTGACAAAATGCCTGTTATTTACGTGACGCATAATCAGACAGAGAGCGACACAGGAAATGGTGGATTTGACTGGCCACGTATTGGTGATGAAATAACGTCATTTGTTTGTAGGATTGTGATCACAGTCCAGCCACCTGCTCCTCTGTCAGCTCTAGAGGAAGTCCCCTCATCAGATAACTCCCCTCTCAGCTCCCTGGATGCGTACCCTATGATGAAAGCTGAGCCATCTCCATTCTCCTCCAGACCTGTCATGTTTGAGACAGAAGAGCTTCTAATGCCTGGCACCCAGGAAGAAATGAATCGGTTTCAAGAAGATACAGTGTCGTCATCCAAAGTACATGTAGAATGCACCTTCCCCAGGCTGGATGTCAACCTACATACAAAGGATGTCTTTGAGAACATCTACAACAGGCTGGCAAGTGACTTGTTGCTATGGGAACCCATGGCTCCCTCTCCAGCAGACCGGCCTGACCCATGTGGATTCAATGTTGGCACAGGGTTGGACCTAGCCAGTCAGATGATGCAGGCACAAGGACCAGATCGGTTTGTCATGTGCAGATCAGGCCTACGCAGTTACGATGATGATGCATCCTCATCTGATGAAGAAAGCAGTAATTTTACGTCACTGGAAAATAAATACAAACGCACAAACTCCAACCCTAATGGCCAGACAGCCTTCACACTTACGCTCAGTGTAGGCAAGGCTAGACTAGCAGTTTTTCCTGAAAGTGAGATTTCTTCTCTCAGTGGAAGTTCCAAGGACTGTAGCTCATGTTCTGAAGAAGTACTTGGAGAAATAGCAGCAGAGTTTAATGACATTACATTCTTTGTAGCAGCTTGTTACAAAAGTCAAGTCGATCTTACCTACCTGTGTCTTCAATCTCAAAAGGTCGCTTTTCAGCATGCGCCTGTAGTGCCACAGGGGGCCCACGTGTCCATGGAGTCCGCCTTTAGTGGAGCTGAGCTCCAGTCTACCTTCTACCACACTGAACCGGGCATACGACAGGTGGACGGGAGGACTAGTGAACCAATGTTTGCTTTTGCGATCAAAGTTTCAGCGGATACGTCGAAAAACATTAAAGAAATCCTCTTTTCACTGGGACTCCGTAGAAGCACTCTTCGCCATAGGATGCTTTCTTCTAAACAGATGTGGCTCACACAGGTAAGAGATTTCTTTGACGTGAAGGATGATCCGGTTCTTGGTTTCAGTCCCCCAGCGGTTGTGACAGTGTTTCACACTCACGTATGGGAAGGCACCATTGATTACAGGCCAATTCACCTTCCGTTACGAGTTCTTGTCACCATGGAAACGTTCAGTGTGTCAAGTAACATCACGATCGAGTCCAATGTCTCTTTGCTGAGATTTATTATTGATGATGCGGCGTTATATCTCTCGGACAAATGCAGTGGTTCTGCAAATATCAGAAACTATGTATGTGTGTTAGATCTTGGGATGTTTGAGCTGTCTCTTTTCACGTGTGACGGCAGTGAACAGGGTCATCCCCAGGTGGAACTGCGCATGTCTAACAACACAGTTCATGTCAGGACATGCTCGGACTCATGTTCCGCTCTGCTTCAGCTGATTCAGTACATCGCTGCAGACGGAGACCTGGTGCCTAGCTATGAACCGGAAGTACCAGATGCCACAAAAACACCACCGACTCCAAGCCGCTGCCCAGCTGATCCGCCGGTCAAGCAGGGGTCTGTGGATGAGGGTGAGCTAAGCAGTATCATGACAGAGGCCATGGTAGATACGCACTGTGTGGATGAGCCCTCTCACGATAAGGGCTTTAAAGGAGAGTTGAATCAGCAGCTTTCCAGATCACCGAGGCGAGACCTGTTCCTATTTCCTGATGATGAGTTGGGCAGTCCAGTTGAGGAGTATTTCCCCCCTGAAGATACCAACATGGAGGTGGCAAATCCGGGGGAGTCAGGCGATGATGAGGAGGATAGTGATGATGATTTCTGTATTCTGGAGCATCCCGATAAAGAACCTGAAGGTTTGAGCCACGAGGTGATCATCAAATGCCTCACAGATGAACAAGTCAACATTGTAGAGAATCATTTTACTGTTCCAATGGGCCCAAGTGATCAACTTTGCGCCCCTAGTCATTTTCCGTCAGCGGTATTTTGTTACACGTTAAAGGAGATGTCTGTGGTGTGGCATTTGTTTGGTGGACGGGACTTTGGTGGCTCAGCGTCACGTGACCAAAAGAAAAAAATAAGCTTTGCACTAGATGAAAAAGGGAAGCCCGTCGACCGTTCCTCTGTGAGCAGACCCACTGTGTTACTGAGTAAAAACACCTCAGCCGCAGCTAATAGCGTGAAGAAACGTAGCGGAGGACCTGACAGAAATAACCATGTACTCATGGAGTTTCACCTAAACAAGATTCGTTTACAGTATGAGCAGTACCCAGAAGACACAGAGCAGGCCTCGCGACTGGTGGTGCTCGTACAGGATGTAGAGATAAGGGACCGATTAGCACATTCACAGATAAACAAGTTTCTGTACCAGTACACGTCTGAGGCCTGTCCAAAACAGTCCCATGCTAACATGATCTTACTCAAGATGTTGTACATTCGTCCTGATCCTGGTCTTAAAGCACAGGAGTGTAATCTGAGAGTGTCCATTCAGCCACTGAGGCTCAATGTGGACCAGGATGCCTTGTTTTTCTTGAGGAATTTTTTCTCGGAGATAATGGGAGAAGCTGCTAAAAACCCTAAAGGTTCAAGTGCAGTTGATTCCAGTCCTGTTAAGCCACCCCCAGATTCTGACTGGTTAACAGAATTCTCTGACGCTGAGGAGACCCTGGTGAACTCCGCCAGTGAGTCCGAGCCAGACACCACTCAACCAGCCCCTACGTTTTTTAGGTCCTTTATATTTTCTCCCGAGGTGCCTATCAGGCTGGACTATCAGGGCAAGAGAGTTGATATGGAACAGGGTACCCTGGCTGGTCTATTAATCGGTCTTGGTCAGCTCAACTGCTCCGAACTTCGTCTAAAGCGCCTGTGTTGTCGTAGCGGCTTACTTGGAATAGACAGAGTGATGAACTACGCTCTGTCTGAGTGGCTGGCGGACATCAGAGGCACCCAGCTACCCGGGATACTGGGTGGAGTCGGTCCTGTGCACTCCTTCCTGCAGTTGTTCCAAGGTCTAGTGGACCTAGTGTGGCTGCCTATAGACCAGTACCGGCGGGATGGGCGTGTCATGAGGGGGCTGCAGAGAGGGGCCAACTCGTTCACTACATCATCGGCTATGGCCTTCCTTGAACTAACCAACAGAGTTGTGCAGTTGATACAGGCGGCGGCAGAGACAGCGTATGACGTAGTGAGCCCAGACTCCCCAGTCAAACGCGGTCAGAATCGCCAGGCCCAGCAACCGTTTGACTTGCGGGAAGGAGTTTCCAATGCGTATCAAGTCTTCAGAGAGGGATTGGGTCAAACGGCTACAAACATTGTTCAAGTCGCCAAAGATGAACACGAACAGAAAGGCGTGACGGGGGCTGTAGGAGGTGTCCTGCGTCAAGTCCCAGCAACCGTGGTCCAGCCCCTTATCCTGGCTACAGAGGCTACTTCCAATGTCCTGGGAGGGGTCCGTAATCAAATCTTGCCCGATGCGCGGCGAGAAGCTGCGGAAAAATGGCGATCTAGTCCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96BY7	Autophagy-related protein 2 homolog B OS=Homo sapiens OX=9606 GN=ATG2B PE=1 SV=5
Q80XK6	Autophagy-related protein 2 homolog B OS=Mus musculus OX=10090 GN=Atg2b PE=1 SV=3
Q2TAZ0	Autophagy-related protein 2 homolog A OS=Homo sapiens OX=9606 GN=ATG2A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004072 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09333 all species →	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026849 all species →	Family	Autophagy-related protein 2	Interproscan
IPR015412 all species →	Domain	Atg2/VPS13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13190 all species →	AUTOPHAGY-RELATED 2, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17906	ATG2; autophagy-related protein 2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.