Gene detail

Detailed information of evm.model.Ap13.790 in Astrangia poculata

Genomic Location: Ap13:8073473...8073937
NR annotation: KAJ7384683.1, hypothetical protein OS493_020264 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1EA99	Mite group 2 allergen-like Ixo r 2 OS=Ixodes ricinus OX=34613 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000868 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02221 all species →	E1_DerP2_DerF2	ML domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003172 all species →	Domain	MD-2-related lipid-recognition domain	Interproscan
IPR039670 all species →	Family	Sterol transport protein NPC2-like	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11306 all species →	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13443	NPC2; Niemann-Pick C2 protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.790 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

18TPM > 0

4Conditions

3,181.1Max TPM

383.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	6	515.86	3,181.10
whole organism · heat control	12	8	692.55	1,632.23
whole organism · cold challenge	12	3	179.27	1,046.18
whole organism · heat challenge	11	1	100.39	1,104.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	3,181.10
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	903.54
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	901.15
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	890.59
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	676.14
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	669.55
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,632.23
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,609.38
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,223.11
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	988.60
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	904.04
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	783.63
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	710.14
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	459.49
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,046.18
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	560.47
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	544.57
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,104.30
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.